41d808acb427f9650f91703c7895bc6b *DESCRIPTION
2ee27fbf932c5dd40032925b29bc0106 *LICENSE
f51b22ffccf9943fa306a8595a4b843f *NAMESPACE
93bac65bcfc59346f3bca47d3799d924 *NEWS.md
1a88d1f8bae1f2ca8cf03751c0d15383 *R/AllClasses.R
5011757060b90462697c94e0f2565b2e *R/AllGenerics.R
acf0a54307227bc1910761bd8aa31b41 *R/annotateProteinInfoFromIndra.R
95e9b0ab974cf254f639b608fce551ce *R/backend-indra-cogex.R
5ae2e70b3c59aab38cdc0a617f55f324 *R/backend-indra-db.R
6dc6d928c558ed7a74c72ca567542950 *R/backend-indra-gilda.R
8138d9469a45b81449fea1c1540bf83f *R/backend-indra.R
2c82565c541e303f324adf9bc9bb5f3d *R/backend-registry.R
0c264483f216307ecba365d47326043b *R/bootstrapTopicModels.R
27771f2eb13d5020d81fe6c27c082c54 *R/compareTopicModels.R
f77c70b8dfa50129d8449bdc2dc432e9 *R/contract.R
254a2214114b5b051e9928bb05d47ff0 *R/cytoscapeNetwork.R
4a80ebce5cde64ab778cf7fcd986b53a *R/decomposeSubnetworkByTopic.R
8208e113042b4d7a09d29be1ae515cc9 *R/decomposeSubnetworkIntoHierarchicalTopics.R
2aef232a64bf0c80402f0225b201aafb *R/deleteEdgeFromNetwork.R
5645d506908ba7e97e8226411a6f63b1 *R/entities.R
67210c1e7ab738414b6855734790dc27 *R/exportNetworkToHTML.R
b5de2b046fed9db3acf06de3ed425e7e *R/filter-edges.R
843ee87852d35a16e5f971c998af9737 *R/filterSubnetworkByContext.R
5fff8c6085229fabd94b33a4da971985 *R/getSubnetworkFromIndra.R
5f5347014b5195525c070db6b01f4b77 *R/network-io.R
3e9ffdaae825856674aff4f62065d8da *R/network-postprocess.R
db2cade804365ddf6c7b2d13d01f5d28 *R/queries.R
904f07f232196c3423cc5ae5adac0625 *R/utils_cytoscapeNetwork.R
45bf580d3d27b316bc302f3ab36c284a *R/utils_decomposeSubnetworkByTopic.R
91d20b16d48c71d27e4df9c1eb555c68 *R/utils_getSubnetworkFromIndra.R
d33a10800fb542097a563f7a725bf1ba *README.md
481eff460022dae8b036a5211480d1df *build/vignette.rds
0425fb72f35b1bc0ef3a756f9bc78a91 *inst/doc/Cytoscape-Visualization.R
523114f2b6680fd4422fe8679fdc0903 *inst/doc/Cytoscape-Visualization.Rmd
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0a2fc18db21504bb3783d740fa8e572f *inst/doc/MSstatsBioNet.html
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1b621fa9c3007f43a7f384e53b9c8db7 *inst/doc/Metabolomics-Analysis.Rmd
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413ced50cf64f456962ebb051cfac65b *inst/extdata/cptac-ccrcc-network.rds
807ec05143d5a9427ebbb94ae5bebf88 *inst/extdata/cptac-ccrcc-protein.csv
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fd832d3b93a52e1f49652ec92bb13e91 *inst/extdata/indraResponse.rds
4233173aa8d89f3c728a7b16429fc73a *inst/extdata/msstats.csv
5de518cb31e6982df81696904b452910 *inst/extdata/panitchpakdi-2022-network.rds
b826c67d4b6210d8ae16ed0d0b463824 *inst/extdata/panitchpakdi-2022.csv
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bb8b36675eb248c6a5be9a1e426d7147 *inst/htmlwidgets/cytoscapeNetwork.yaml
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9ecdf9ec77f8f09e344d199cb7e6c9f0 *inst/script/groupComparisonModel.R
ebb960ee91b24c8fd75ee34377a6db77 *inst/script/panitchpakdi-2022-network.R
258a77bfaaa6b383366f629e8def678a *man/NetworkBackend-class.Rd
35a656f24bdd93d61e50128d2c3f59f4 *man/NetworkQuery-class.Rd
337ddf6d7003d4c7d6b4f99be8ce8ab6 *man/add_entity_values.Rd
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196de6b9efbb207a980c9728b60d6c69 *man/backend_capabilities.Rd
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425aba141d3e41eb6c5985b729c2ad37 *man/cytoscapeNetwork.Rd
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0088ac19e880b74df39ab2d2c35fd92e *man/deleteEdgeFromNetwork.Rd
89845a7232d95b910b762d603187ff4f *man/dot-validateAnnotateProteinInfoFromIndraInput.Rd
0943d380908b35ffdfb31810c204b84f *man/exportNetworkToHTML.Rd
84feaf82e88a3912295c487fe81227b6 *man/filterSubnetworkByContext.Rd
f336c7dd2720836c9588463e6dea0bf0 *man/filter_by_curation.Rd
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db4ffc200c09165d4fe45662b6f5796e *man/get_curations.Rd
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437ce8c35a5cd701dadc681621469358 *man/get_network.Rd
f31ee85fa1c73beceb91a02cff9d586a *man/indra_backend.Rd
39f319289189d2d0ab456bcd49b48396 *man/indra_evidence_sources.Rd
17bbb4848f6c38034589fc491a858683 *man/load_network.Rd
3a5e1f0685684cb63558dfbb593ec92c *man/merge_networks.Rd
5a10f6b28d2fbcba38f1c0727bd83bab *man/network_queries.Rd
ae5634b94704d1571e95d57fca5a70e7 *man/prepare_entities.Rd
f37e1da3d8775fbb4f6dfde14bd28aac *man/previewNetworkInBrowser.Rd
a2ea5bd47e915189142dd2c95f0548cf *man/print.topicHierarchy.Rd
40bd6f1a4c02f1242fac8763e421e9af *man/renderCytoscapeNetwork.Rd
b971e2d35233dacb697e184638260c5e *man/save_network.Rd
9386ec764c680c0c6ee108ec2306424d *man/select_entities.Rd
60a4014e1cc6ca5840dcfefe36d7dcdf *man/subnetwork_query.Rd
ddf8728a59399d5687c50aa60bed5923 *man/validate_network.Rd
00ee37784a6e02f6896039ef2479b92f *tests/testthat.R
485a1889be3353b305a1eb1c42acd2be *tests/testthat/_fixtures/golden_subnetwork.rds
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3afa83815d298de5e5b42df8cbc94cf9 *tests/testthat/helper-legacy-input-filter.R
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8455be4fc44154fd13ef78c4afb55248 *tests/testthat/test-getSubnetworkFromIndra.R
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109e353f958609ddc9891b5b3d99a04f *tests/testthat/test-network-io.R
10a786a3938db6aa644f3b63bdaf919d *tests/testthat/test-ptm-integration.R
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6e8829dced3d32b02b8005ba3ae3c55b *tests/testthat/test-utils_cytoscapeNetwork.R
507cfad6fddcf7ce8b712e7c4bb77f36 *tests/testthat/test-utils_getSubnetworkFromIndra.R
523114f2b6680fd4422fe8679fdc0903 *vignettes/Cytoscape-Visualization.Rmd
949775b714003aeef99e8948d441f5b8 *vignettes/Filter-By-Context.Rmd
c2439f88bcc50dbd148fc8da07e2f680 *vignettes/MSstatsBioNet.Rmd
1b621fa9c3007f43a7f384e53b9c8db7 *vignettes/Metabolomics-Analysis.Rmd
e11832fb09b6ee254763e1a698860056 *vignettes/PTM-Analysis.Rmd
