4607952b0db8c37ef42497ce430f53d6 *DESCRIPTION
7f5ef0207e67af368f0597b353bd836f *NAMESPACE
17a5a6986ca2b67c6f80e1e071d33799 *R/ExperimentalDesignSimulation.R
b58ba416ea66cab776be6c4913bc7edb *R/Fit_Isotonic_Regression.R
9d516d1079a4374f4c6e9d29b779bb33 *R/IC50_prediction.R
10d2b3514c4d8313ed333134912b862e *R/IC50_prediction_datatable.R
1da013b9e42b82c68d17066557f5c514 *R/PredictIC50.R
0acb400ac58bee2dfe3f84a60c885000 *R/PrepareData.R
ce52474ec9d12378931d9b4fd1d2315b *R/TPR_Power_Curve.R
48b8f8f4968ad7edf4463a3225b7ee1d *R/Utils.R
d3cc6b73e26cfa8b7e604c4b93876d1c *R/Visualize_Isotonic_Fit.R
01c4d2f1e1a7a2676ecbe16081035e5b *R/data-DIA_MSstats_Normalized.R
c812b8200b22f2e3d8376b99f598343f *R/protein_turnover_ratio_helper.R
32427610b64a92d1fc6711897b0eeab9 *README.md
2f31779872b687909a437766da3b4a2d *build/vignette.rds
b326b874886d9cca55ad371d8dbe9f1e *data/DIA_MSstats_Normalized.rda
55021799ff77f83899cf173da724680a *data/datalist
64be471e521aa7e9babf02498fd84fb7 *inst/NEWS.Rd
597f0f37dc0c6dd86d78ec2630f651e8 *inst/doc/MSstatsResponse.R
9a8e3e599461359a13713b93ab89845a *inst/doc/MSstatsResponse.Rmd
25dd1a19e5d792d480f4fee2801ff57e *inst/doc/MSstatsResponse.html
8cc5591fcc6fbb3577db1fac0e490f9a *inst/extdata/DIA_MSstats_Normalized.RDS
6d4069faaee9ee13f0b5d2396de2dd34 *inst/extdata/template1.RDS
eac369522f354fee6b29b23d2e0c045b *inst/extdata/template3.RDS
96ef20d63e328fbfe3a47c06350f1f55 *man/DIA_MSstats_Normalized.Rd
3c1132f165b4e920cd1969274345588f *man/MSstatsPrepareDoseResponseFit.Rd
85f6a439e7cd2685cee75eac8acfd868 *man/PredictIC50.Rd
0965babcb9581a37765d3211bddc536b *man/bootstrapIC50.Rd
14b6709e728c58630fc5dba3c616b05c *man/bootstrapIC50LogScale.Rd
5490f3b43ec5dce436cf5528ff81167c *man/bootstrapIC50Precalculated.Rd
0c9a8692b6ba452d2364121d3fd30014 *man/calculateConfidence.Rd
1338010cfc401df279350d2038e35fe8 *man/calculatePeptideWeights.Rd
b94fa7a6cb0bbeb0c38883ce46210de0 *man/calculateQCScore.Rd
61b5541a17617dc76f8bf40bc53e263a *man/calculateTurnoverRatios.Rd
5b7395d38874e19a7d8238017bec67f7 *man/classifyTurnoverProteins.Rd
bfa9141e9843fb0a6f49b82b7b5387b5 *man/convertGroupToNumericDose.Rd
bece1335895e021c4e9b7b31e36adbea *man/doseResponseFit.Rd
a931cd85b7eca285ca7ad7c50477af6f *man/dot-extractTemplatesFromData.Rd
d72257189d49718d433e8742962af7da *man/fitIsotonicRegression.Rd
65f5a0fff1ef31a55db4ac6027b7b117 *man/futureExperimentSimulation.Rd
8072aae7f8567cd9b1a10450ef2aae20 *man/kendall_monotonicity.Rd
c53c59479f0963c120bc56b9a8e6ec3d *man/parse_timepoint.Rd
b8db3128ea20b629d6f74eb6c575c958 *man/plotHitRateMSstatsResponse.Rd
f5f2cb285e3a6cb9312e64c5bc9a2f85 *man/plotIsotonic.Rd
51116f7c00d9ea6a02405dfbdf158dcd *man/plot_tpr_power_curve.Rd
69f955b70f8c16668e9b779a1e2b3116 *man/predictIC50Parallel.Rd
3695957cbe019c143bcb957f83e5ba28 *man/run_tpr_simulation.Rd
be7cba0572d8f982be3e004827c8a69d *man/simulateChemoProteinLevelNonParametric.Rd
24d4d328f7eda4a2e79edd3989f85b6a *man/visualizeResponseProtein.Rd
21915f163b5d94f0fe59666cfbcd37ff *tests/testthat.R
88bfbeff24fa90738da470953ff55680 *tests/testthat/test-ExperimentalDesignSimulation.R
c0b171eab1e5a5f3b598db503474cc63 *tests/testthat/test-IC50_prediction.R
b15ee2183e5c51169064cf77c2557ff6 *tests/testthat/test-PredictIC50.R
8770e7079697708d35bf6e02342a4223 *tests/testthat/test-PrepareData.R
9b19a8fc58215d23c1400069854ae727 *tests/testthat/test-TPR_Power_Curve.R
acb92b3fab1c2fe0505354804ff1c471 *tests/testthat/test-Visualize_Isotonic_Fit.R
ae9d4a49e233852dfe56eabae8e96766 *tests/testthat/test_Isotonic_Regression.R
9a8e3e599461359a13713b93ab89845a *vignettes/MSstatsResponse.Rmd
