2f36077f21f8e3a9670fcb9bad2d82c7 *DESCRIPTION
29238ea36198c1040e7ef16cc8f711b4 *NAMESPACE
128bbf5860e511befed639a1888d67bb *R/analysis_wrappers.R
9aa0ddc41b509e98cc5232f467575a76 *R/plotting.R
01dc09804a0b821411741a9c80672038 *R/utils.R
c98c245e88374ede76915f829cd0b57f *build/vignette.rds
dbb8cc14d89c7e815189d44abe926c65 *inst/doc/PostChicago.R
da2279a56120bfab241de5a7a6786e91 *inst/doc/PostChicago.Rmd
ac9cdadfecb86a488e6df8d72a39992f *inst/doc/PostChicago.html
ccf1a513d382b3f30e8eb905ede83637 *inst/extdata/dataPath/RA_0h_rep1.chinput
7b9c6ab34351ee17e6aa9bf2fcf28d80 *inst/extdata/dataPath/RA_0h_rep2.chinput
8120f07f703338a8b944d9fab9878c6f *inst/extdata/dataPath/RA_72h_rep1.chinput
78ebb32c604a6e329dca62317d2a796d *inst/extdata/dataPath/RA_72h_rep2.chinput
885bb874684124373d68342db32910dd *inst/extdata/designDir/DpnII.mm10.chr11.Hoxb3.rmap
8d23e3e35ec0fbdd7fb73f13f15e1ad7 *inst/extdata/designDir/My.baitmap
55f5fa70425905769227ccf6af052ab2 *inst/extdata/intervals/K27ac_peaks.bed
67e1796c609a0824300b0a00fb0448ce *inst/extdata/intervals/K27me3_peaks.bed
33563678b2cb8608ccfebeacc0e2592e *inst/extdata/postchicago/ints_all.txt
2018894ec3bdd05b05c76ed1dbda174e *inst/extdata/results/cd_RA_0h.rds
82d9ff08d9ccc950fd22b43dbb0ab123 *inst/extdata/results/cd_RA_0h_rep1.rds
15f223a611efd1ec8dae3e272e361b08 *inst/extdata/results/cd_RA_0h_rep2.rds
4de45f65b004e0294d0cdb819c1f12db *inst/extdata/results/cd_RA_72h.rds
7681012b5978de6c272da84ba6010618 *inst/extdata/results/cd_RA_72h_rep1.rds
abe6262c2c238a16ef920b50f2d336a2 *inst/extdata/results/cd_RA_72h_rep2.rds
97eb9390f44e8e04b7167888f2efa3c9 *inst/extdata/results/fnreadsPerBait
d302b8d26117341c6c7aef2ebd2c1f99 *inst/extdata/results/gDistrTotIntsPerBait
4c614388896e937096fb69909442d635 *inst/extdata/results/hSigIntsPerBait
415ddfd56d6ced3cc5005bab2e1cfdf4 *inst/extdata/results/iDistReadsPerSigIntPerBait
ed65bda786c3b63fdac47314cbfaa71e *man/PostChicago-package.Rd
5b26d12ceaae298555b68b01bbf87e09 *man/aggregatePeaks.Rd
2baffea529ab9cc01262746fc409c8da *man/aggregatePeaks_regions.Rd
4c61ca30a63620081c86a558e1bd815f *man/annotateInts.Rd
cc8ed706a9574d2bd3f984434706d47d *man/baitmap2baited_genes.Rd
ff09b497ddb8222e065af8f75cf870b9 *man/boxplotsCapC.Rd
ad13a1ca4b6fe776357f6b4bcdd086f7 *man/getMatrix.Rd
cae8ee7b31aea39cc1fe090760e187b9 *man/loadCdList.Rd
2ddfa86f35cbcc0e58079c4d83177106 *man/loadGrl.Rd
a744e33176963f2f9e6a0475ca4e9743 *man/makeBedGraphs.Rd
e1004242610ea2801501fbc326663ba4 *man/makeIntsTable.Rd
b628204dda40dfc8a5b272ca89021042 *man/makeOneGeneOnePeak.Rd
b45a2b4a29559860461a46896bed5506 *man/makeQCplots.Rd
93abfc673816b859d37026515eae285d *man/plotAggregatePeaks.Rd
4a6a179fe2b6040479101cab49c44597 *man/plotInteractions.Rd
05cda3cc12d87633b9fd1c470ff18d8c *man/plotSigIntsStats.Rd
d924d9135842d622b5b9a277609d85cb *man/quantifyWithinPeaks.Rd
b1d4d550af5fe206afea422eb263bc61 *man/rmap2rmapgr.Rd
59043cc08a5c3eccd3e91524d91ea5e7 *man/runChicagoForPostChicago.Rd
da2279a56120bfab241de5a7a6786e91 *vignettes/PostChicago.Rmd
