1bcd8db47b5e06fddfc1845a69a53c48 *DESCRIPTION
10bf23b31c10a47cfe88540e8ac82f65 *NAMESPACE
5c3b26899b4809eed4794bae98ae2db7 *NEWS.md
e90bc4f0a53ec83a83f11059550c5f39 *R/VISTA-class.R
f0d5e962bd361415e50244ea2209fe98 *R/VISTA-package.R
f012dc8cd7beac71de275b6a3af32544 *R/accessors.R
c9fe7ac5321021e47014588801d057d8 *R/benchmarking.R
a4d6a8423b3cd4ef9e2042ccc70981c0 *R/bioccheck_roxygen_fixes.R
40fb06ea33a11fd1e61ea0827d2931d3 *R/counts-methods.R
ea23a3f04f261c80fe1e9c1dcabe781d *R/data-documentation.R
3b55be81f721e20c4602bf35a62806d0 *R/deconv.R
0903eb4a93fa35674b7ad95044f96a1f *R/defaults.R
7fc4fbaec0adbe4eebe39e78720d2090 *R/deprecation.R
c5191f57ac38b04fa514382ce1b75463 *R/example_vista.R
7ee8f86d3fbd4886ca90f5013eef31c1 *R/exporting.R
a2836f5c33a6b66993a8ea0a6aa6b9f0 *R/functional_analysis.R
4f8038c62fe6a12967610bea4f78b51d *R/input_preparation.R
6f19f689cc06d44374f39d66518b8258 *R/print.R
ebab823e5714df60d8dbb7dead5d4fb3 *R/reporting.R
fb5047d32fabad01fbe348784d20fcc3 *R/rnaseq_related.R
2feeca30aba6400c4dc7441619859352 *R/show-methods.R
a684c7a0fb09cf43008ca1749ef8bc9b *R/subset-methods.R
080efda6de43dad01003395ec6748c0e *R/sysdata.rda
a716c8db58c39d0c83d5be1c66f956cb *R/updateObject.R
542ea8ba2616653f5c579315965453ce *R/utils-internal.R
f4f87fb570955dd5561602cdd64df6ba *R/validate.R
4b754a633290891380a3d1ffdfa90e71 *R/viz_related.R
52e798025b8d75adcc9a9dae000ac969 *README.md
10639005a4d7d0fc4f6bfe20c63fd957 *build/vignette.rds
4a7c43a9aa2f64c278ffe4bac06c122a *data/count_data.rda
200fe0c696e97b60acaed3fa6701fdbe *data/sample_metadata.rda
bca1db23480e24c56483a29360346d6b *inst/benchmarks/benchmark-de-equivalence.R
c8ab97600a6fa32711c60697eb7dcb51 *inst/doc/VISTA-airway.R
6f5e20f117ca843e33b1797e9a9f2814 *inst/doc/VISTA-airway.Rmd
2d663eee66d7fe7555c1139cb669e8e2 *inst/doc/VISTA-airway.html
fc414df4746f0c113ed2b544a8e0cfe3 *inst/reports/vista-report-template.yml
30b1d7a509a51d79aa52f4a9b2fd898b *man/VISTA-accessors.Rd
aa99396a0b15e581175a9603ad30b3be *man/VISTA-class.Rd
d2a7db04217f1227e9e7d6ab0ef5d57e *man/VISTA-deprecated.Rd
b8d0652a696bf9ea2cfc207c8ecba97e *man/VISTA-package.Rd
316fd3be21c33fc8421d566891a5dee1 *man/VISTA-show.Rd
bebbb2aec7073c7cf909f94f01e166c3 *man/VISTA-subset.Rd
527906759af4779f6a2308152b09612d *man/as_deseq_dataset.Rd
cab8a0912745cc185d20b800e4d1a759 *man/as_vista.Rd
c16b41c2a336fb10017fb7abc6f04c66 *man/benchmark_vista_equivalence.Rd
040797d1246984fed738a584075eacb2 *man/count_data.Rd
c3f3756167352ce322c57c5a754e26f4 *man/counts.Rd
264d24f14acda8563c63683af5a41f01 *man/create_vista.Rd
1dee9c2b1c1e1d0eb20bfbed35b28d00 *man/derive_vista_metadata.Rd
6dc8d4bd3042ed65ec56008a6f5a3beb *man/dot-EnhancedVolcano2.Rd
4a1ecbe1c53a5c031fc9d40a06d6e485 *man/dot-align_de_to_counts.Rd
8815a986f93f63f5a7f7be678fee657a *man/dot-categorize_deg_results.Rd
56756e475b5aa71db763a81b9f44bc29 *man/dot-prepare_pca_dataframe.Rd
385d8ec0dc68beed91966419c108e394 *man/dot-run_deseq_comparisons.Rd
828741a4ec06ca12f855640773b571f1 *man/dot-tidy_de_results.Rd
a57f5cfe00fa7d6da1a45aaf421a68d5 *man/enrichMsigDB.Rd
cba220d27b2fa81827fd9a147eee1f9d *man/example_vista.Rd
f1099afc53f93e295d640ab27e275a02 *man/export_vista_assets.Rd
9eadd020c53305c03e407eb5138ea1e2 *man/figures/logo.png
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da5909b5b9405825bfc3bea82a8ad130 *man/get_celltype_barplot.Rd
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0c799f887061b1160b6dce6d7dfaa3a1 *man/get_celltype_heatmap.Rd
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1316e7400a9e961e94cd464f9f05e60f *man/get_deg_alluvial.Rd
9b2796ecfc69c443a8c51f81bdbffa7a *man/get_deg_count_barplot.Rd
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ae7f8bb9a97ca41105c9f4547e884b1f *man/get_deg_count_pieplot.Rd
7e54f96c66510e733db093247f31163e *man/get_deg_venn_diagram.Rd
c7367885c56f8ee05ba6870191117c90 *man/get_enrichment_chord.Rd
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50f01d3d6fe13bbce8c22c11b13ac4dd *man/get_foldchange_boxplot.Rd
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189cc3693335ab3648e2de844a8df586 *man/get_foldchange_lineplot.Rd
5d3458b72d74f6b6953aeba16ea31da6 *man/get_foldchange_lollipop.Rd
03da593ffed8652345d2ee78b4894ffe *man/get_foldchange_matrix.Rd
35c3f4d336ff41817edb2a802c4b6edc *man/get_foldchange_raincloud.Rd
a20dc29c9a7ae73331f629bd4dd30e29 *man/get_foldchange_scatter.Rd
55f94e8a8acfaa0c232de4aaf0e15939 *man/get_genes_by_regulation.Rd
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df8e793d23d40c52957365a85645aad2 *man/get_gsea.Rd
3cbe773c24b746fa5765c745cb9cc3ae *man/get_kegg_enrichment.Rd
3cfd2488b8587c32cd79bcd0ef2ad5d5 *man/get_ma_plot.Rd
55277c81018493ca901c8679f21fe213 *man/get_mds_plot.Rd
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1861698aa7b4ecbefa87f2899a1c8e0b *man/get_pathway_genes.Rd
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124ea2659dbe0a31915c498f4cac0f19 *man/get_pca_plot.Rd
11fd5e94c2091d9e82876bc753bdc941 *man/get_umap_plot.Rd
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32fb832c11ccfefc2fed7c04a805cf74 *man/print.VISTA.Rd
1d2cd64561ac78a61a1309bdc0e4182d *man/read_vista_counts.Rd
166f9508505e0b2cda40db3c0b7cc665 *man/read_vista_metadata.Rd
8bfdb8c22771e7bbcb76a3c6dcb38253 *man/run_cell_deconvolution.Rd
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3b388ba897fd3a64277220d1ee8d56bf *man/set_de_source.Rd
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9b48f03951f32cddec188d34d294a6c8 *man/updateObject-VISTA-method.Rd
a2991937d4ef1a899f34f9caae2e94a6 *man/validate_vista.Rd
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d89cc2c8a1c9b336d99ca08303a8bc87 *tests/testthat.R
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3eba2abbb9cde79e63f3fe8b9cdc9f74 *tests/testthat/test-class-print-reporting.R
3a1f99d3c47402c65255b64a0eafcfaa *tests/testthat/test-consensus.R
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1e584dbb5a297d3ec7a3ff25f9b6ce4e *tests/testthat/test-enrichment.R
0ebc0315a7642f4ccfd539a8614c6761 *tests/testthat/test-example-vista.R
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06b111427c2364be55facce684a615b9 *tests/testthat/test-validation.R
7369061ecf0369d64ab2cee7d5b4f088 *tests/testthat/test-visualization-advanced.R
6f5e20f117ca843e33b1797e9a9f2814 *vignettes/VISTA-airway.Rmd
