134d70820e210aa083269f0dacb32fa2 *DESCRIPTION
482786028f53eadeedde91683cbc75c1 *LICENSE
2267e7ae8454b87093242744d08eb167 *NAMESPACE
86ec9df23c449e60b74085e81fa60049 *NEWS.md
3120c61318e0c8d1f0d1c83f313d6325 *R/RcppExports.R
d8eac57733aaf8451de1db90b28834bb *R/align.R
ec83d8781b0f71340821dd8037558f82 *R/bulk_de_wrappers.R
bb483bd7e5be8033f0db2c9fd0260472 *R/differential_geometry.R
20c3a0d90c788c1a6f369cddf475326b *R/estimate_linear_coefficients.R
4bf9f13c26955498a9c2416b13de58e7 *R/find_de_neighborhoods.R
775c956da7bbe96a5bc3cf3e50d91137 *R/geodesic_regression.R
c55148bf3766ad663775eebce5e2f786 *R/glioblastoma_example_data.R
881cc132c0b6ef947cf38b5fd977c547 *R/handle_data_parameter.R
8babd8fe8e344c11c394cb4fcc1f1228 *R/handle_design_parameter.R
f5e741dce2bba5fec22769af81261951 *R/handle_test_data_parameter.R
32234c64db41e17f94046c23bbbb7bea *R/lemur-package.R
d3ee7aadad44f77fc5972a2b7ed1af5d *R/lemur.R
6f0c976874fae94a752a3a94ed6a4c3b *R/lemur_fit.R
13a86927640523e0ca966046ca1b8fc4 *R/max_diversity_clustering.R
496dff966c35e3f5ca3cd0b80c5e1722 *R/parse_contrasts.R
bc961fdf0e244f357c4de859f43d922b *R/pca.R
1d5dae544932abdb1ee19214181fd6de *R/predict.R
25e84963e007c69e3b38f1e47ce6281c *R/project_on_fit.R
20f0d15282b02ab4f51b4982e0632d58 *R/recursive_least_squares.R
bbce80c0f9a70880f4031746417059a6 *R/ridge_regression.R
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5661b26194ce7200d9ef038393db2d06 *R/util.R
0b772baa9183ff9b3b71fdac2aa413bc *README.Rmd
5b71f6959bb7f60013665d92556b5012 *README.md
12ba1cd0348fdb79a32332d81f66daab *build/vignette.rds
9cd0c776f4dd1d10a223dd82f4be7982 *data-raw/generate_max_diversity_clustering_fixtures.R
dac9391a2745f69545f9ecf711ad7e5b *data/datalist
ccbb69cd8045499cda4a9195b3c81cb7 *data/glioblastoma_example_data.rda
e754383a90accc1eb8878dcda82bf231 *inst/CITATION
b53d68c97fc303a60d90090fbe6db81c *inst/doc/Introduction.R
0f7ba795eec1f11565d4c3936a34b5eb *inst/doc/Introduction.html
63841b55d294b68b0fc2d1635e8f72a4 *inst/doc/Introduction.qmd
fc057d72041b133eb1145c2aeabaef99 *man/align_harmony.Rd
d422ba51110087bba040dca43e09b2d7 *man/align_impl.Rd
862bff833b1060b477e07e4133881523 *man/cash-lemur_fit-method.Rd
c96ecc2716239a94cd5b77fd23bece17 *man/compute_contrasts.Rd
9f447841fba2c802d88bc91b0b806666 *man/figures/equation_schematic.png
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dc31f2790bdb6dd025ec3dda43388f98 *man/find_de_neighborhoods.Rd
2c460126a7b5bae99161700e0904d168 *man/fold_left.Rd
2bfc1370a36c475c92b6ae38f48ef28f *man/glioblastoma_example_data.Rd
0f6daf6c7b4d91e55ddedeb1aa31a7d0 *man/grapes-zero_dom_mat_mult-grapes.Rd
0ac5f37a6e59145602a3835ffc45ccd9 *man/grassmann_geodesic_regression.Rd
573204be537b2cfa0c48d4d963fbdf51 *man/grassmann_lm.Rd
ab71d37389052c9801949dfe56eef280 *man/init_max_diversity_clustering.Rd
2a9997f14376274f063e3435938c627f *man/lemur.Rd
ed07a88d96d1d483c911fd5bed316fce *man/lemur_fit.Rd
021acbd5f893a59028852f46e68f1e39 *man/mply_dbl.Rd
30af103479e5ac3c6c59387c25a47038 *man/one_hot_encoding.Rd
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ff8c8d9d23ad3fc6d147a8dd2add5d53 *man/project_on_lemur_fit.Rd
1094bd3e37f9417dcf38c116742aa8d4 *man/pseudoinverse.Rd
389f0d51d74c5d6559db436b5c363570 *man/recursive_least_squares.Rd
baed3bf8f4ecf5bf7939eeb4bb4ea79d *man/reexports.Rd
4175ca35e4cb57fa80c3fff94bd5013d *man/residuals-lemur_fit-method.Rd
4ebca81bd3f10d87ed6bf88a1b54d784 *man/ridge_regression.Rd
5d1bb91e81ed07e65368204dfa9878ce *man/run_max_diversity_clustering.Rd
e93a8f4f38ba1b75acd65e547750b4e4 *man/stack_slice.Rd
e458f111d56b4bded824aab1991bfae1 *man/test_global.Rd
64f5656c6d528f164624b804e01c059b *man/update_diversity_clustering_R.Rd
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars.win
721c91e269752eba635009feed18cd96 *src/RcppExports.cpp
c3ebc29bc6e528965950bd6f8cbb4ee6 *src/util.cpp
7b691e89b69ed3ea45c84625fe8d952d *tests/testthat.R
179ed1832a727abb1a97897d7584e89a *tests/testthat/helper.R
602ba93293fbf5126067befb136a85cb *tests/testthat/test-align.R
12fc5c901dc2e08e28f953db987c07c3 *tests/testthat/test-differential_geometry.R
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c216d26684b784324950c6fcfe2904f7 *tests/testthat/test-geodesic_regression.R
e13637d82a1d6a859f2262ff8fd27b8c *tests/testthat/test-lemur.R
6a1fe1f48f9c81b86b8a7b270423e067 *tests/testthat/test-max_diversity_clustering.R
cf8c9b1436343f50a25b118031656ff3 *tests/testthat/test-parse_contrasts.R
435b616181fa25927eaf7d54b50c98e7 *tests/testthat/test-pca.R
72d149ecf1edb014b8ccf6374b180eb8 *tests/testthat/test-recursive_least_squares.R
4fec0fc3d72eadda5e366c3d6904bf00 *tests/testthat/test-ridge_penalty.R
963edfa04e82365b9c1abfcc300348f3 *tests/testthat/test-test_de.R
745247193e8f10b7a9dadd0f5d914a14 *tests/testthat/test-util.R
63841b55d294b68b0fc2d1635e8f72a4 *vignettes/Introduction.qmd
9f447841fba2c802d88bc91b0b806666 *vignettes/man/figures/equation_schematic.png
