751cb1f156a02dbe53826f88a0365f32 *DESCRIPTION
2dbeab63635c984f83c5e6d164d3c174 *NAMESPACE
13e1d989cc10631558532af5655c9080 *R/annotation.R
da9e3051639c09a6eef51d117e208b57 *R/argcheck.R
bdfe89ccf1b1d502e5b35526b7bf52a7 *R/count.R
8d14224c0e7f11762d2142cc5642b1ab *R/deseq.R
63aaeaf55d2774d2ef9a8e21e868cf68 *R/export.R
4379375dd7cf365d7027f49d09e097b5 *R/external.R
524b3b93d044d9ddbfad080205e30f8e *R/filter.R
f4218ea8623cf44ef085ffab9f271c67 *R/json.R
9236daf04660990a1642eec3493bbd9d *R/main.R
19d2bbe901e819da975594a687bf8b85 *R/meta.R
0c148e2ce1ba7a9345200e3846ec9bf6 *R/metaseqR2-package.R
807ccf6a904f4f48eb79bea488b81be7 *R/metaseqr2-data.R
0f48ac39005f5f4554f085c1a6e1e312 *R/noiseq.R
ccb69ab8f623d4394bd27736ed7962c8 *R/norm.R
0421e3e20ad8cdb32e752160723e3aea *R/plot.R
cd7577e885e3524f9e981fa6148c8f95 *R/query.R
670d1fc1667e215f2de958429360434c *R/reportdb.R
6be70f463b644454ab9062ccc08cf97f *R/sim.R
4ad11115d4483c0adfef14e007ae498a *R/stat.R
752fdf5e3424f718596d993ca242789b *R/tracks.R
091cc26bc13fa74f16202edfa36c7d67 *R/util.R
c19ad42e0de1107c3c94e849e65fc1b1 *R/zzz.R
17f035c2775c39effe1389a8bbac2a15 *README.md
9e0ad178c892c060797c770dd72d9501 *build/vignette.rds
3a9b0e3986d8613f604be516db716bed *data/hg19pvalues.rda
c2601ab32e03c2f97b45f1377c57dd2b *data/mm9GeneData.rda
1e4b0588b1cc60ae964905cb071b20f6 *inst/CITATION
2451ba91ae5826bc42ec774a85c8c628 *inst/NEWS
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5c5f115c32422bd733e2fbd3eccf44bd *inst/dexie.min.js
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e9c43e41fbc5443a76f11cbd047dee41 *inst/doc/metaseqr2-annotation.Rmd
1636faf5c5c8e2de295b7bc6d5a52de7 *inst/doc/metaseqr2-annotation.html
2dc12a0ab739ad27b020939e8ddf1ff5 *inst/doc/metaseqr2-statistics.R
9fb3bdc26b9a0dc10c0ee159b9fabe58 *inst/doc/metaseqr2-statistics.Rmd
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1b9a26a65d866919afff6b97ae7ee14b *inst/exporting.js
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0f64c98b8f96fe0af0e39dd252cb7dc4 *inst/extdata/T.bam
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6d43d688c759ac7bda1ce4b38bfc7ae7 *inst/metaseqr2_report.Rmd
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0176e0b6a8597556854f772f52e5f86e *inst/unitTests/test_estimate_aufc_weights.R
ce70c12fa38005a55fdef329bb0f77c3 *inst/unitTests/test_metaseqr.R
551d8f83589a5370fbad8721a8852bb1 *man/buildAnnotationDatabase.Rd
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3d208b82a538c4f27c6db5cda1b9d524 *man/combineBonferroni.Rd
2348e14bd38bf5a2bc4d68a7450acd2a *man/combineHarmonic.Rd
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5d8855f5b1a663efd2a38aa1ce939936 *man/diagplotEdaseq.Rd
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0719a66fe0bc7abc579b54173e1a3eb0 *man/diagplotFtd.Rd
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51f243bc44d1e4084a63750349b4a193 *man/estimateAufcWeights.Rd
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4e3fe7876cb46cc20b3203afb4f34922 *man/getAnnotation.Rd
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8e01f20445bcaa5612f3cdb1e9b8d784 *man/getInstalledAnnotations.Rd
46ad9915bdd7a6cef3100c4d9c11d3ed *man/getWeights.Rd
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d2af737fd54ff84f1347ab574ee5b23b *man/importCustomAnnotation.Rd
18fee0260563f814663c29580bd42083 *man/libsizeListMm9.Rd
5a2a8919d2e257e8689fc4f5ad5f355b *man/loadAnnotation.Rd
687c946b653a63d1296377c0376c0722 *man/makeSimDataSd.Rd
2336dd6143d609215251772a116d917a *man/makeSimDataTcc.Rd
eff0bbe879843c54b38657a9cda87a17 *man/metaTest.Rd
554397f6bbf8f14867d96491b659cd9e *man/metaseqr2.Rd
a567c9ce9972d9f68966efe9fea29c94 *man/metaseqrPlot.Rd
a3230ccd7c71594f09697938c9c12f35 *man/mm9GeneCounts.Rd
3e12f329778d834b618228e59577fe2e *man/normalizeAbsseq.Rd
caaf6e2b4e55325f4ab5547f69189d05 *man/normalizeDeseq.Rd
4e65a63070f1116f6fdb9d794ddd545a *man/normalizeDeseq2.Rd
9ce84ec86fc40e5d22ada91117874c25 *man/normalizeDss.Rd
a3ee7320c1809f6c368b75e69120c637 *man/normalizeEdaseq.Rd
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6aea65f7065af878a9fd0d90b4ce1774 *man/normalizeNbpseq.Rd
e064b7f364dc2a38c710a167d4344b3c *man/normalizeNoiseq.Rd
8b02a5eb149609748a51a03a38970de3 *man/read2count.Rd
7c7fc5349bc301015153cf997c203dbb *man/readTargets.Rd
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d3ddd03c8a6d53938ed6f72676ddbb19 *man/statAbsseq.Rd
2b97be3bf838863c505d9b1631f0c979 *man/statDeseq.Rd
dbb7834448f4ad75851f5e21acd1863c *man/statDeseq2.Rd
43d13aa78714d56e69711723263bea52 *man/statDss.Rd
5b124a474cfe90f542c652c8a018f969 *man/statEdger.Rd
dcaad48c8a0ec04561d429e07df41403 *man/statLimma.Rd
297c577b53efe39d3b97edbd6de9fa02 *man/statNbpseq.Rd
5118cdc887143f199a602fb9d8b22c80 *man/statNoiseq.Rd
2b66cab1ff1079813bb6bfaac34f209f *src/pval.c
0dbe9fe479f970ba253f59d449d39d6e *tests/runTests.R
e9c43e41fbc5443a76f11cbd047dee41 *vignettes/metaseqr2-annotation.Rmd
9fb3bdc26b9a0dc10c0ee159b9fabe58 *vignettes/metaseqr2-statistics.Rmd
