% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/mia.R
\docType{data}
\name{mia-datasets}
\alias{mia-datasets}
\title{mia datasets}
\description{
mia provides various datasets derived from independent experimental studies.
The datasets represent instances of the TreeSummarizedExperiment and
MultiAssayExperiment containers and can serve as tools to practice the
mia functionality.
}
\details{
Currently, the following datasets are available:
\itemize{
\item{\code{\link{dmn_se}}: A SummarizedExperiment with 130 features and
278 samples}
\item{\code{\link{enterotype}}: A TreeSummarizedExperiment with 553
features and 280 samples}
\item{\code{\link{esophagus}}: A TreeSummarizedExperiment with 58 features
and 3 samples}
\item{\code{\link{GlobalPatterns}}: A TreeSummarizedExperiment with 19216
features and 26 samples}
\item{\code{\link{ibdmdb}}: A compact
\code{MultiAssayExperiment} demo dataset with 2 experiments (MGX + MTX)}
\item{\code{\link{HintikkaXOData}}: A MultiAssayExperiment with 3
experiments (microbiota, metabolites and biomarkers)}
\item{\code{\link{peerj13075}}: A TreeSummarizedExperiment with 674
features and 58 samples}
\item{\code{\link{Tengeler2020}}: A TreeSummarizedExperiment with 151
features and 27 samples}
\item{\code{\link{Tito2024QMP}}: A TreeSummarizedExperiment with 676
features and 589 samples}
}
}
\examples{
# Load dataset from mia
library(mia)
data("GlobalPatterns", package = "mia")

# In this case, the dataset is a TreeSE, so it is renamed as tse
tse <- GlobalPatterns

# Print summary
tse
}
\keyword{datasets}
