f67a0931257e224844f3b16512cc1145 *DESCRIPTION
4aded5ab0a55db9457554ad9e70a33a7 *LICENSE
49aab9ded739aa206cae3434e2aaa586 *NAMESPACE
8b8c2f1f9bc6fee8a5b137cccbf658a7 *NEWS.md
34e245ca4778a269083b65a5d1e4bbd9 *R/calibration.R
23dd8e372e6b70a81654f8357f00f5d4 *R/collections.R
5bc1086377bd5b2d62b9587045058ea4 *R/data.R
8b830e564173f085a1ffd96680b1bc39 *R/io.R
d95d6dd8ab09d2298a4365725061329d *R/jaccard.R
b23de9c1e75313e0807b7859003a437a *R/path2path-package.R
8c22a90b7f5dec06f1bd25bc4746a3c6 *R/pipeline.R
475720b3b6bb0ff8ee0c1c7ac3190311 *R/plots.R
62421f594ff96c45ac54227602a33280 *R/significance.R
9b5b0cfb6b6372dce5469ab91a4f75f2 *R/stage1.R
c422764fda14bac41ce375c2464e6ff3 *R/stage2.R
1e5745815bc40173ddc785e19f4bec3c *R/utils.R
133727a777cb33a35d161e6606dd7670 *README.md
2565d61af00bead07df2b3bfea8c1583 *build/vignette.rds
e999aa38dbca14c0c6ad1436ce08d429 *data/demo_pathways.rda
9bb90b1eb70466287d1ee2b4c11281bd *data/demo_z.rda
349461b1ac2db69e1d3c07320a58d382 *inst/doc/path2path.R
b330e3c50a438fa8b29e84fe200a9558 *inst/doc/path2path.Rmd
ef6712371bcea59bf0b051f4e63bcdb4 *inst/doc/path2path.html
1c0cf6515837b5e325b64a24c0f835d0 *inst/extdata/zscore_demo.csv.gz
3b3f3e0209e4431cc503a391f6aa3055 *inst/scripts/make_demo_data.R
7b8caa6dbd6fd137e31ce96c3240f1e7 *man/as_path2path_matrix.Rd
991860008ca102bec5fc6de2c4655181 *man/as_path2path_se.Rd
9390a93085d15958a42d8fafa1f5d39f *man/bh_populated.Rd
bcf6dde2f5fb88ea011e8b439c93f594 *man/build_null_pool.Rd
99348513feb977834e613e23a383ae45 *man/calibrate_pvalues.Rd
093a0bba6b034d9d27ba873c7ef187ce *man/dataset_tag.Rd
539e8f713cc8099c1d9a509067a3ccce *man/demo_pathways.Rd
2d9ea38fc3c42e063d7fd921b86f9e28 *man/demo_z.Rd
380d0521058fb759de8c519a5eef0a83 *man/jaccard_mask.Rd
11f1073982a70a5a41588a91c2dbfa05 *man/load_pathways.Rd
b1fd6b736430efef4863fe538cc8cfe2 *man/order_by_activity.Rd
c58453eb6b4085ee7012cc18c23f8342 *man/path2path-package.Rd
a28e35bd024e63d534e0ce2c8559c139 *man/path2path.Rd
bd29dbdab55d65041b0f1af69bf6d06b *man/pathway_jaccard.Rd
c0e57fc9258afe12150db1892c0f65d5 *man/permute_input.Rd
e9a907b165a1ffd8d9c61a601bdc0174 *man/plot_calibration.Rd
f5f5d2d69835d60e2facb165e3e72db2 *man/plot_entry.Rd
b1c33560e5514e11b0233eabc7b53d11 *man/plot_map.Rd
faedba3bf8451a42c8018355f5f5694b *man/read_input_matrix.Rd
3f9a0ccbda12ba416578c81c34b4ec81 *man/select_active.Rd
f9732dd22d055f0fcae099a03317b308 *man/stage1_nes.Rd
97ea1bd9493f855be1e497420df5654b *man/stage2_matrix.Rd
c4c55e98fa16de8abf646ca74e5611ec *man/write_result.Rd
247daaecc9f924761024e693968cf751 *tests/testthat.R
f40ad532a9b494361d27f0e3501a0f89 *tests/testthat/test-calibration.R
48b3fe09b8088cb41bc89c9ebb4d9537 *tests/testthat/test-pipeline.R
b330e3c50a438fa8b29e84fe200a9558 *vignettes/path2path.Rmd
12eda6110519a3e01e42993726443312 *vignettes/references.bib
