Package: smoothclust
Version: 1.9.6
Title: smoothclust
Description: Tools for spatial domain analysis in spatial transcriptomics data.
    Includes spatial smoothing of gene expression profiles for downstream
    clustering and a boundary density (BD) metric for summarizing spatial
    domain organization. The smoothing function returns processed expression
    values for subsequent clustering. BD requires only spatial coordinates
    and categorical labels, and provides local and sample-level summaries
    of label transitions.
Authors@R: c(
    person("Lukas M.", "Weber", 
           email = "weberlm3@gmail.com", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "0000-0002-3282-1730")))
URL: https://github.com/lmweber/smoothclust
BugReports: https://github.com/lmweber/smoothclust/issues
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: Spatial, SingleCell, Transcriptomics, GeneExpression,
        Clustering
Depends: R (>= 4.4.0)
Imports: SpatialExperiment, SummarizedExperiment, S4Vectors,
        BiocNeighbors, Matrix, methods, utils
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, STexampleData, scran, scater, ggspavis,
        testthat
Config/roxygen2/version: 8.1.1
git_url: https://git.bioconductor.org/packages/smoothclust
git_branch: devel
git_last_commit: b06dd0c
git_last_commit_date: 2026-10-13
Repository: Bioconductor 3.24
Date/Publication: 2026-10-19
NeedsCompilation: no
Packaged: 2026-10-20 00:19:11 UTC; biocbuild
Author: Lukas M. Weber [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3282-1730>)
Maintainer: Lukas M. Weber <weberlm3@gmail.com>
