c7178765aa3b1b70b72fd2ac01b2c296 *DESCRIPTION
f856e006979e7d7340f1bb62d58690c4 *NAMESPACE
1fb3702e18bba1cd9eab6f07f3f51726 *NEWS.md
a54e2b83d8c05a7b24e528d2f11d47f7 *R/cleanVariants.R
aa3d6a36a3cda5c9beff8c144c95be24 *R/digestSalmon.R
f22cb9efa445735ed7b1a1359748426c *R/genomogrify.R
2e1bb6d8eae2e2c7b2aaa2cc9eb6f425 *R/helpers.R
a24b72271179286c27fd097e182d8c2e *R/indelcator.R
edfa15bec93eff7c9bc0df5d598d0391 *R/overlapsByVar.R
ecbb3d99858c05cefbf95980318e8b9c *R/owl.R
216c765e212b86487c4e43e43b881815 *R/parY.R
60715376b23d149e6f3ae1a933b9ed33 *R/shiftByVar.R
6e24b4414b19e80031cd731ae37a6406 *R/sjFromExons.R
a81cde876b241a42775144c4e447fd79 *R/transmogR-package.R
95c7387a69e8c691f0fc0e3a0abda6e4 *R/transmogrify.R
435280d2e26489a48b119e34d9e2883b *R/upsetVarByCol.R
892129e4848ba48e07261deea78e92af *R/varTags.R
9aae3db25b17b51ce39f151758bccd0c *R/varTypes.R
5eb4f286485e2dc1863a2b2711ff7f40 *README.md
3a93dc86e786f08fc9de007c2cddb343 *build/vignette.rds
5ce052d30a47b09481ff407eeafedf7c *inst/doc/creating_a_new_reference.R
815c3f32a7fc391d5e2c98379df62f8a *inst/doc/creating_a_new_reference.Rmd
87878233bfdd95b053e2d9fb19d45fff *inst/doc/creating_a_new_reference.html
3471f71277f1a67af67a1397295e1308 *inst/extdata/1000GP_subset.vcf.gz
5023e991f3064cb6baacdf0a6b6df97a *inst/extdata/1000GP_subset.vcf.gz.tbi
2d71830f3c713d3cd60cc5eb12854300 *inst/extdata/gencode.v44.subset.gtf.gz
16ffc4310bacd9105aaa62d55c8e4f3c *inst/extdata/salmon_test/aux_info/bootstrap/bootstraps.gz
7d916d778dea5b24f1b72c55fcf8f18b *inst/extdata/salmon_test/aux_info/bootstrap/names.tsv.gz
9884fc333937cf77e9ebb555e1914657 *inst/extdata/salmon_test/aux_info/meta_info.json
b91c7c8777d59a444485370410e70a3c *inst/extdata/salmon_test/quant.sf
ff738def5ea6701a790fcb34c2752b13 *inst/figures/favicon.png
2db595cd51293b2f27e91f8187000f73 *inst/figures/transmogrifier.png
5abac371d39af63d155d71a1a66489fe *inst/references.bib
2c048c768f8208a45e6fbd928b33931d *inst/scripts/1000GP_subset.md
0a35ab12110d3ce9129f7f82e5840693 *inst/scripts/f.R
a8ecb6e1c0b0945ae30580b247c14235 *inst/scripts/find_speed_up.R
3469bafeba3d1013c39265a79c94ace4 *inst/scripts/gencode.v44.subset.md
09855f03ed34afb401e5f6dbe6df6ea0 *man/cleanVariants-methods.Rd
91c281d422926cff9ac515e17d407435 *man/digestSalmon.Rd
835a7ca9c03febf9aa95e1e66154702d *man/figures/transmogR.png
ffe0d01a7fb0f1ac974d52ea123ededc *man/genomogrify-methods.Rd
5840f64808a26587d291195397733da9 *man/indelcator-methods.Rd
a4262152c718d57fe66a7965e4b1fa03 *man/overlapsByVar-methods.Rd
f5d018581372e0966c9686e155c4c5c4 *man/owl-methods.Rd
db4c3aedbacfa2cced560d9404a129e4 *man/parY-methods.Rd
8cf20d5569a8d1924781f2e6d4a6f882 *man/shiftByVar.Rd
7694675263bae1e7843adfb4d24d3b8b *man/sjFromExons.Rd
677ba28a0c3be5093c3ffd7f40608d16 *man/transmogR-package.Rd
108bd97d7f976e974783f9d46ce9d758 *man/transmogrify-methods.Rd
be329376a68c1de0db3af25e8b9a3cc2 *man/upsetVarByCol.Rd
b9d1d98725ef73432f411c34a13e92c8 *man/varTags.Rd
49a23d4041018e41b1c4316f6a8db7b2 *man/varTypes.Rd
b3d193ce0f1655714f6689464f72da7e *src/Makevars
11ddd7b4acb99bf405a1364a4c691171 *src/calc_boot_sums_ti.c
5d01701caab8c56bd2771f0b5de75d9d *src/init.c
2a8ddfe6070120d552215be837afb3bb *src/parse_trans_names.c
cc1a6d8b95fb0bc1725684e4e7a78c71 *tests/testthat.R
375b661bf28a58d1092a04541306850a *tests/testthat/setup.R
b2769dd24cede11564930268edf00367 *tests/testthat/test_cleanVariants.R
41aed8e27622160f7aae3782f90aeea3 *tests/testthat/test_digestSalmon.R
3e155d09c27d2195615ec2ad82d0690e *tests/testthat/test_genomogrify.R
4a89fc5a4296a418ee177c8576cf7d42 *tests/testthat/test_helpers.R
a68e45c5de9f6d7983dfa6c081e37ac7 *tests/testthat/test_indelcator.R
0544881284cdc90455a24c31ad0ce4a0 *tests/testthat/test_overlapsByVar.R
bf8c79ab4f40dc6ffbbb907076d2d40d *tests/testthat/test_owl.R
252fbc3d4860cb54b0225a67a0740bff *tests/testthat/test_parY.R
b98a747805c8e21817753c4b5bcd35bb *tests/testthat/test_shiftByVar.R
d45aab28f568afbb72128a043a637ed1 *tests/testthat/test_sjFromExons.R
d59cb739424958a73700d457a8211d8d *tests/testthat/test_transmogrify.R
f873228eab04bd7ae08d01bbba0b71ad *tests/testthat/test_upsetVarByCol.R
3d0fa17424772c5dff46b69c6ff71104 *tests/testthat/test_varTags.R
1acc1eaccc4af8d2694b35a35b7c7851 *tests/testthat/test_varTypes.R
815c3f32a7fc391d5e2c98379df62f8a *vignettes/creating_a_new_reference.Rmd
