utils::sessionInfo()
## R Under development (unstable) (2025-10-20 r88955)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.3 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.23-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] EpiCompare_1.15.2 BiocStyle_2.39.0
##
## loaded via a namespace (and not attached):
## [1] splines_4.6.0
## [2] BiocIO_1.21.0
## [3] bitops_1.0-9
## [4] ggplotify_0.1.3
## [5] filelock_1.0.3
## [6] tibble_3.3.0
## [7] R.oo_1.27.1
## [8] polyclip_1.10-7
## [9] XML_3.99-0.20
## [10] lifecycle_1.0.4
## [11] httr2_1.2.1
## [12] lattice_0.22-7
## [13] MASS_7.3-65
## [14] magrittr_2.0.4
## [15] plotly_4.11.0
## [16] sass_0.4.10
## [17] rmarkdown_2.30
## [18] jquerylib_0.1.4
## [19] yaml_2.3.11
## [20] plotrix_3.8-13
## [21] ggtangle_0.0.9
## [22] cowplot_1.2.0
## [23] DBI_1.2.3
## [24] RColorBrewer_1.1-3
## [25] lubridate_1.9.4
## [26] abind_1.4-8
## [27] GenomicRanges_1.63.0
## [28] purrr_1.2.0
## [29] R.utils_2.13.0
## [30] BiocGenerics_0.57.0
## [31] RCurl_1.98-1.17
## [32] yulab.utils_0.2.2
## [33] tweenr_2.0.3
## [34] rappdirs_0.3.3
## [35] gdtools_0.4.4
## [36] IRanges_2.45.0
## [37] S4Vectors_0.49.0
## [38] enrichplot_1.31.2
## [39] ggrepel_0.9.6
## [40] tidytree_0.4.6
## [41] ChIPseeker_1.47.1
## [42] codetools_0.2-20
## [43] DelayedArray_0.37.0
## [44] DOSE_4.5.0
## [45] ggforce_0.5.0
## [46] tidyselect_1.2.1
## [47] aplot_0.2.9
## [48] UCSC.utils_1.7.0
## [49] farver_2.1.2
## [50] base64enc_0.1-3
## [51] matrixStats_1.5.0
## [52] stats4_4.6.0
## [53] BiocFileCache_3.1.0
## [54] Seqinfo_1.1.0
## [55] GenomicAlignments_1.47.0
## [56] jsonlite_2.0.0
## [57] systemfonts_1.3.1
## [58] tools_4.6.0
## [59] ggnewscale_0.5.2
## [60] treeio_1.35.0
## [61] TxDb.Hsapiens.UCSC.hg19.knownGene_3.22.1
## [62] Rcpp_1.1.0
## [63] glue_1.8.0
## [64] SparseArray_1.11.7
## [65] xfun_0.54
## [66] qvalue_2.43.0
## [67] MatrixGenerics_1.23.0
## [68] GenomeInfoDb_1.47.1
## [69] dplyr_1.1.4
## [70] withr_3.0.2
## [71] BiocManager_1.30.27
## [72] fastmap_1.2.0
## [73] boot_1.3-32
## [74] caTools_1.18.3
## [75] digest_0.6.39
## [76] mime_0.13
## [77] timechange_0.3.0
## [78] R6_2.6.1
## [79] gridGraphics_0.5-1
## [80] seqPattern_1.43.0
## [81] GO.db_3.22.0
## [82] gtools_3.9.5
## [83] dichromat_2.0-0.1
## [84] RSQLite_2.4.5
## [85] cigarillo_1.1.0
## [86] R.methodsS3_1.8.2
## [87] tidyr_1.3.1
## [88] generics_0.1.4
## [89] fontLiberation_0.1.0
## [90] data.table_1.17.8
## [91] bsplus_0.1.5
## [92] rtracklayer_1.71.0
## [93] httr_1.4.7
## [94] htmlwidgets_1.6.4
## [95] S4Arrays_1.11.1
## [96] scatterpie_0.2.6
## [97] downloadthis_0.5.0
## [98] pkgconfig_2.0.3
## [99] gtable_0.3.6
## [100] blob_1.2.4
## [101] S7_0.2.1
## [102] impute_1.85.0
## [103] XVector_0.51.0
## [104] htmltools_0.5.8.1
## [105] fontBitstreamVera_0.1.1
## [106] bookdown_0.45
## [107] fgsea_1.37.0
## [108] scales_1.4.0
## [109] Biobase_2.71.0
## [110] png_0.1-8
## [111] ggfun_0.2.0
## [112] knitr_1.50
## [113] tzdb_0.5.0
## [114] reshape2_1.4.5
## [115] rjson_0.2.23
## [116] nlme_3.1-168
## [117] curl_7.0.0
## [118] cachem_1.1.0
## [119] stringr_1.6.0
## [120] BiocVersion_3.23.1
## [121] KernSmooth_2.23-26
## [122] parallel_4.6.0
## [123] AnnotationDbi_1.73.0
## [124] restfulr_0.0.16
## [125] pillar_1.11.1
## [126] grid_4.6.0
## [127] vctrs_0.6.5
## [128] gplots_3.3.0
## [129] tidydr_0.0.6
## [130] dbplyr_2.5.1
## [131] cluster_2.1.8.1
## [132] evaluate_1.0.5
## [133] magick_2.9.0
## [134] tinytex_0.58
## [135] readr_2.1.6
## [136] GenomicFeatures_1.63.1
## [137] cli_3.6.5
## [138] compiler_4.6.0
## [139] Rsamtools_2.27.0
## [140] rlang_1.1.6
## [141] crayon_1.5.3
## [142] labeling_0.4.3
## [143] plyr_1.8.9
## [144] fs_1.6.6
## [145] ggiraph_0.9.2
## [146] stringi_1.8.7
## [147] viridisLite_0.4.2
## [148] genomation_1.43.0
## [149] gridBase_0.4-7
## [150] BiocParallel_1.45.0
## [151] Biostrings_2.79.2
## [152] lazyeval_0.2.2
## [153] GOSemSim_2.37.0
## [154] fontquiver_0.2.1
## [155] Matrix_1.7-4
## [156] BSgenome_1.79.1
## [157] hms_1.1.4
## [158] patchwork_1.3.2
## [159] bit64_4.6.0-1
## [160] ggplot2_4.0.1
## [161] KEGGREST_1.51.1
## [162] SummarizedExperiment_1.41.0
## [163] AnnotationHub_4.1.0
## [164] igraph_2.2.1
## [165] memoise_2.0.1
## [166] bslib_0.9.0
## [167] ggtree_4.1.1
## [168] fastmatch_1.1-6
## [169] bit_4.6.0
## [170] ape_5.8-1