Summarization and expression/phenotype association of CNV ranges

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Documentation for package ‘CNVRanger’ version 1.24.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cnvEQTL	CNV-expression association analysis
cnvGWAS	Run the CNV-GWAS
cnvOncoPrint	OncoPrint plot for CNV regions
generateGDS	Produce CNV-GDS for the phenotyped samples
importLrrBaf	Import LRR and BAF from text files used in the CNV analysis
plotEQTL	Plot EQTL region
plotManhattan	Manhattan Plot
plotRecurrentRegions	Plot recurrent CNV regions
populationRanges	Summarizing CNV ranges across a population
setupCnvGWAS	Setup the folders and files to run CNV-GWAS analysis