Gene Identifier Mapper
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Documentation for package ‘ginmappeR’ version 1.4.0
Help Pages
| changeCARDPath | Change path to download CARD database |
| getCARD2KEGG | Translates a CARD database ID to KEGG database |
| getCARD2NCBIGene | Translates a CARD database ID to NCBI Gene database |
| getCARD2NCBINucleotide | Translates a CARD database ID to NCBI Nucleotide database |
| getCARD2NCBIProtein | Translates a CARD database ID to NCBI Protein database |
| getCARD2UniProt | Translates a CARD database ID to UniProt database |
| getCARDVersion | Prints CARD database version being used |
| getKEGG2CARD | Translates a KEGG database ID to CARD database |
| getKEGG2NCBIGene | Translates a KEGG database ID to NCBI Gene database |
| getKEGG2NCBINucleotide | Translates a KEGG database ID to NCBI Nucleotide database |
| getKEGG2NCBIProtein | Translates a KEGG database ID to NCBI Protein database |
| getKEGG2UniProt | Translates a KEGG Genes database ID to UniProt database |
| getKEGGVersion | Prints KEGG database version being used |
| getNCBIGene2CARD | Translates a NCBI Gene database ID to CARD database |
| getNCBIGene2KEGG | Translates a NCBI Gene database ID to KEGG database |
| getNCBIGene2NCBINucleotide | Translates a NCBI Gene database ID to NCBI Nucleotide database |
| getNCBIGene2NCBIProtein | Translates a NCBI Gene database ID to NCBI Protein database |
| getNCBIGene2UniProt | Translates a NCBI Gene database ID to UniProt database |
| getNCBIIdenticalProteins | Search NCBI Identical Protein database by a given NCBI ID |
| getNCBINucleotide2CARD | Translates a NCBI Nucleotide database ID to CARD database |
| getNCBINucleotide2KEGG | Translates a NCBI Nucleotide database ID to KEGG database |
| getNCBINucleotide2NCBIGene | Translates a NCBI Nucleotide database ID to NCBI Gene database |
| getNCBINucleotide2NCBIProtein | Translates a NCBI Nucleotide database ID to NCBI Protein database |
| getNCBINucleotide2UniProt | Translates a NCBI Nucleotide database ID to UniProt database |
| getNCBIProtein2CARD | Translates a NCBI Protein database ID to CARD database |
| getNCBIProtein2KEGG | Translates a NCBI Protein database ID to KEGG database |
| getNCBIProtein2NCBIGene | Translates a NCBI Protein database ID to NCBI Gene database |
| getNCBIProtein2NCBINucleotide | Translates a NCBI Protein database ID to NCBI Nucleotide database |
| getNCBIProtein2UniProt | Translates a NCBI Protein database ID to UniProt database |
| getNCBIVersion | Prints NCBI databases versions being used |
| getUniProt2CARD | Translates an UniProt database ID to CARD database |
| getUniProt2KEGG | Translates an UniProt database ID to KEGG database |
| getUniProt2NCBIGene | Translates an UniProt database ID to NCBI Gene database |
| getUniProt2NCBINucleotide | Translates an UniProt database ID to NCBI Nucleotide database |
| getUniProt2NCBIProtein | Translates an UniProt database ID to NCBI Protein database |
| getUniProtSimilarGenes | Get similar UniProt genes by a given identity percentage |
| getUniProtVersion | Prints UniProt database version being used |
| updateCARDDataBase | Downloads the most up-to-date version of CARD database |