Rotation based gene set analysis

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Documentation for package ‘roastgsa’ version 1.6.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

dragtable	dragtable for html writings
expr.tcga	Tumor Bladder TCGA data
fd.tcga	Tumor Bladder TCGA data
hallmarks.hs	Hallmarks homo sapiens gene symbol
heatmaprgsa_hm	Heatmap of roastgsa results
htmlrgsa	roastgsa results in html form
kegg.hs	KEGG genesets homo sapiens entrez
pd.tcga	Tumor Bladder TCGA data
plot.roastgsa	roastgsa plot
plot.ssGSA	Plot single sample Gene Set Analysis
ploteffsignaturesize	roastgsa effective signature size
plotGSEA	GSEA plot
plotStats	General GSA plot
print.roastgsa	Rotation-based Gene Set Analysis
print.ssGSA	Single sample Gene Set Analysis
roastgsa	Rotation-based Gene Set Analysis
sorttable	sorttable for html writings
ssGSA	Single sample Gene Set Analysis
varrotrand	roastgsa variance rotations under gene randomization