Hi-C Direct Caller Plus
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Documentation for package ‘HiCDCPlus’ version 1.16.0
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| add_1D_features | add_1D_features |
| add_2D_features | add_2D_features |
| add_hicpro_allvalidpairs_counts | add_hicpro_allvalidpairs_counts |
| add_hicpro_matrix_counts | add_hicpro_matrix.counts |
| add_hic_counts | add_hic_counts |
| construct_features | construct_features |
| construct_features_chr | construct_features_chr |
| construct_features_parallel | construct_features_parallel |
| expand_1D_features | expand_1D_features |
| extract_hic_eigenvectors | extract_hic_eigenvectors |
| generate_binned_gi_list | generate_binned_gi_list |
| generate_bintolen_gi_list | generate_bintolen_gi_list |
| generate_df_gi_list | generate_df_gi_list |
| get_chrs | get_chrs |
| get_chr_sizes | get_chr_sizes |
| get_enzyme_cutsites | get_enzyme_cutsites |
| gi_list2HTClist | gi_list2HTClist |
| gi_list_binsize_detect | gi_list_binsize_detect |
| gi_list_Dthreshold.detect | gi_list_Dthreshold_detect |
| gi_list_read | gi_list_read |
| gi_list_topdom | gi_list_topdom |
| gi_list_validate | gi_list_validate |
| gi_list_write | gi_list_write |
| hic2icenorm_gi_list | hic2icenorm_gi_list |
| hicdc2hic | hicdc2hic |
| hicdcdiff | hicdcdiff |
| HiCDCPlus | HiCDCPlus |
| HiCDCPlus_chr | HiCDCPlus_chr |
| HiCDCPlus_parallel | HiCDCPlus_parallel |
| HTClist2gi_list | HTClist2gi_list |
| straw | straw |
| straw_dump | straw_dump |