Plot customizable linear genomes displaying arbitrary data
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Documentation for package ‘karyoploteR’ version 1.34.2
Help Pages
| addGeneNames | addGeneNames |
| autotrack | autotrack |
| colByCategory | colByCategory |
| colByChr | colByChr |
| colByRegion | colByRegion |
| colByValue | colByValue |
| darker | darker |
| filterParams | filterParams |
| findIntersections | findIntersections |
| getChromosomeNamesBoundingBox | getChromosomeNamesBoundingBox |
| getColorSchemas | getColorSchemas |
| getCytobandColors | getCytobandColors |
| getCytobands | getCytobands |
| getDataPanelBoundingBox | getDataPanelBoundingBox |
| getDefaultPlotParams | getDefaultParameters |
| getMainTitleBoundingBox | getMainTitleBoundingBox |
| getTextSize | getTextSize |
| getVariantsColors | getVariantsColors |
| horizonColors | horizonColors |
| is.color | is.color |
| kpAbline | kpAbline |
| kpAddBaseNumbers | kpAddBaseNumbers |
| kpAddChromosomeNames | kpAddChromosomeNames |
| kpAddChromosomeSeparators | kpAddChromosomeSeparators |
| kpAddColorRect | kpAddColorRect |
| kpAddCytobandLabels | kpAddCytobandLabels |
| kpAddCytobands | kpAddCytobands |
| kpAddCytobandsAsLine | kpAddCytobandsAsLine |
| kpAddLabels | kpAddLabels |
| kpAddMainTitle | kpAddMainTitle |
| kpArea | kpArea |
| kpArrows | kpArrows |
| kpAxis | kpAxis |
| kpBars | kpBars |
| kpDataBackground | kpDataBackground |
| kpHeatmap | kpHeatmap |
| kpLines | kpLines |
| kpPlotBAMCoverage | kpPlotBAMCoverage |
| kpPlotBAMDensity | kpPlotBAMDensity |
| kpPlotBigWig | kpPlotBigWig |
| kpPlotCoverage | kpPlotCoverage |
| kpPlotDensity | kpPlotDensity |
| kpPlotGenes | kpPlotGenes |
| kpPlotHorizon | kpPlotHorizon |
| kpPlotLinks | kpPlotLinks |
| kpPlotLoess | kpPlotLoess |
| kpPlotManhattan | kpPlotManhattan |
| kpPlotMarkers | kpPlotMarkers |
| kpPlotNames | kpPlotNames |
| kpPlotRainfall | kpPlotRainfall |
| kpPlotRegions | kpPlotRegions |
| kpPlotRibbon | kpPlotRibbon |
| kpPlotTranscripts | kpPlotTranscripts |
| kpPoints | kpPoints |
| kpPolygon | kpPolygon |
| kpRect | kpRect |
| kpSegments | kpSegments |
| kpText | kpText |
| lighter | lighter |
| makeGenesDataFromTxDb | makeGenesDataFromTxDb |
| mergeTranscripts | mergeTranscripts |
| plotDefaultPlotParams | plotDefaultPlotParameters |
| plotKaryotype | plotKaryotype |
| plotPalettes | plotPalette |
| prepareParameters2 | prepareParameters2 |
| prepareParameters4 | prepareParameters4 |
| processClipping | processClipping |
| transparent | transparent |