ATACseqTFEA-package     Transcription Factor Enrichment Analysis for
                        ATAC-seq
calWeights              Calculate the weights for binding score
count5ends              Prepare counts matrix for enrichment analysis
countsNormalization     Normalize counts by width of count region
DBscore                 Differential binding analysis
doTFEA                  Transcription factor enrichment analysis
ESvolcanoplot           Plot enrichment score for one transcription
                        factor
eventsFilter            Filter the RangedSummarizedExperiment objects
expandBindingSites      Prepare the genomic ranges for proximal and
                        distal regions for counting
extdata                 Data in extdata
getEnrichmentScore      The methods for TFEAresults-class
getWeightedBindingScore
                        Calculate the weighted binding score
importFimoBindingSites
                        Prepare binding site by fimo results
plotES                  Plot enrichment score for one transcription
                        factor
prepareBindingSites     Prepare binding site for TFEA
reduceByPercentage      Reduce by percentage of overlaps of GRanges
                        object
TFEA                    Transcription factor enrichment analysis
TFEAresults-class       Class '"TFEAresults"'
