Dm.tnumber              The amount of thymines in the cDNA of each
                        transcript of Drosophila Melanogaster.
Doelken2008             Mus Musculus and Homo Sapiens DTA experiment
                        from Doelken et al.
DTA-package             Dynamic Transcriptome Analysis
DTA.dynamic.estimate    Estimation of synthesis and decay rates upon
                        perturbation
DTA.dynamic.generate    Simulation of DTA experiments upon perturbation
DTA.estimate            Estimation of synthesis and decay rates
DTA.generate            Simulation of DTA experiments
DTA.map.it              Mapping function to switch between different
                        identifiers.
DTA.normalize           cDTA normalization procedure.
DTA.phenomat            Create a phenomat that suits your experiment.
DTA.plot.it             Plots in any format and any quality
Hs.datamat              Gene expression profiles of the Homo Sapiens
                        DTA experiment from Doelken et al.
Hs.enst2ensg            Mapping of Homo Sapiens gene and transcript
                        identifiers.
Hs.phenomat             Design of the Homo Sapiens DTA experiment from
                        Doelken et al.
Hs.reliable             Gene identifiers valid for parameter estimation
                        from the Homo Sapiens Doelken et al. DTA
                        experiment.
Hs.tnumber              The amount of thymines in the cDNA of each
                        transcript of Homo Sapiens.
Miller2011              Saccharomyces Cerevisiae wild-type DTA
                        experiment from Miller et al.
Miller2011dynamic       Saccharomyces Cerevisiae salt stress DTA
                        experiment from Miller et al.
Mm.datamat              Gene expression profiles of the Mus Musculus
                        DTA experiment from Doelken et al.
Mm.enst2ensg            Mapping of Mus Musculus gene and transcript
                        identifiers.
Mm.phenomat             Design of the Mus Musculus DTA experiment from
                        Doelken et al.
Mm.reliable             Gene identifiers valid for parameter estimation
                        from the Mus Musculus Doelken et al. DTA
                        experiment.
Mm.tnumber              The amount of thymines in the cDNA of each
                        transcript of Mus Musculus.
Pol.phenomat            Design of the Saccharomyces Cerevisiae
                        rpb1-N488D (Slow Polymerase) cDTA experiment
                        from Sun et al.
Raw.datamat             Gene expression profiles of the Saccharomyces
                        Cerevisiae rpb1-N488D (Slow Polymerase) and
                        wild-type cDTA experiment from Sun et al.
Sc.affy2ensg            Mapping of SaccharomycesCerevisiae Affymetrix
                        Yeast 2.0 and gene identifiers.
Sc.datamat              Gene expression profiles of the Saccharomyces
                        Cerevisiae wild-type DTA experiment from Miller
                        et al.
Sc.datamat.dynamic      Gene expression profiles of the Saccharomyces
                        Cerevisiae salt stress DTA experiment from
                        Miller et al.
Sc.ensg.reliable        Gene identifiers valid for parameter estimation
                        from the Saccharomyces Cerevisiae Sun et al.
                        cDTA experiment.
Sc.phenomat             Design of the Saccharomyces Cerevisiae
                        wild-type DTA experiment from Miller et al.
Sc.phenomat.dynamic     Design of the Saccharomyces Cerevisiae salt
                        stress DTA experiment from Miller et al.
Sc.reliable             Gene identifiers valid for parameter estimation
                        from the Saccharomyces Cerevisiae Miller et al.
                        wild-type DTA experiment.
Sc.reliable.dynamic     Gene identifiers valid for parameter estimation
                        from the Saccharomyces Cerevisiae Miller et al.
                        salt stress DTA experiment.
Sc.ribig.ensg           Ribosome biogenesis genes.
Sc.rpg.ensg             Ribosomal protein genes.
Sc.stress.ensg          ISA stress module.
Sc.tf.ensg              Transcription factors.
Sc.tnumber              The amount of thymines in the cDNA of each
                        transcript of Saccharomyces Cerevisiae.
Sp.affy.reliable        Gene identifiers valid for cDTA normalization
                        from the Saccharomyces Cerevisiae Sun et al.
                        cDTA experiment.
Sp.tnumber              The amount of thymines in the cDNA of each
                        transcript of Schizosaccharomyces Pombe.
Sun2011                 Saccharomyces Cerevisiae rpb1-N488D (Slow
                        Polymerase) and wild-type cDTA experiment from
                        Sun et al.
tls                     Weighted Total Least Square Regression.
Wt.phenomat             Design of the Saccharomyces Cerevisiae
                        wild-type cDTA experiment from Sun et al.
