calcAssocProbOR         Calculate Odds-ratio
calcRawAssocProbOR      Calculate Raw Association Probability Odds
                        Ratio (OR)
collapseDegCreToGene    Collapse DegCre associations to a single TSS
                        per gene
convDegCreResListToCreGeneScoreGR
                        Convert a degCreResList to a creGeneScoreGR
convertDegCreDataFrame
                        Convert DegCre Results List to DataFrame
convertdegCreResListToGInteraction
                        Convert DegCre Results List to GInteractions
                        Object
DegCre                  DegCre
degCrePRAUC             Calculate PR AUC for DegCre results.
DexNR3C1                DegCre input data for examples.
getAssocDistHits        Get Associations and Distances Between Genomic
                        Regions
getDistBinNullAssocProb
                        Calculate Null Association Probability for Each
                        Distance Bin
getExpectAssocPerDEG    Get Expected Associations per DEG
optimizeAlphaDegCre     Run DegCre with DEG alpha optimization.
plotBrowserDegCre       Make Browser Plots from DegCre Results
plotDegCreAssocProbVsDist
                        Plot DegCre Association Probability vs. Binned
                        Genomic Distance
plotDegCreBinHeuristic
                        Plot DegCre Bin Algorithm Statistics
plotExpectedAssocsPerDeg
                        Plot Histogram of Expected Associations per DEG
runDegCre               Generate DegCre associations
