Package: GeneNetworkBuilder
Type: Package
Version: 1.54.0
Title: GeneNetworkBuilder: a bioconductor package for building
        regulatory network using ChIP-chip/ChIP-seq data and Gene
        Expression Data
Authors@R: c(person("Jianhong Ou", "Developer", role = c("aut", "cre"),
        email = "jou@morgridge.org"), person("Lihua Julie Zhu",
        "Developer", role = "aut", email = "Julie.Zhu@umassmed.edu"))
Author: Jianhong Ou, Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu
Maintainer: Jianhong Ou <jou@morgridge.org>
Imports: plyr, graph, htmlwidgets, Rgraphviz, RCy3, rjson, XML,
        methods, grDevices, stats, graphics
Depends: R (>= 2.15.1), Rcpp (>= 0.9.13)
Suggests: RUnit, BiocGenerics, RBGL, knitr, shiny, STRINGdb, BiocStyle,
        magick, rmarkdown, org.Hs.eg.db
LinkingTo: Rcpp
Description: Appliation for discovering direct or indirect targets of
        transcription factors using ChIP-chip or ChIP-seq, and
        microarray or RNA-seq gene expression data. Inputting a list of
        genes of potential targets of one TF from ChIP-chip or
        ChIP-seq, and the gene expression results, GeneNetworkBuilder
        generates a regulatory network of the TF.
License: GPL (>= 2)
Lazyload: yes
LazyData: true
biocViews: Sequencing, Microarray, GraphAndNetwork
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Encoding: UTF-8
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libxml2-dev
        libssl-dev python3 libzmq3-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:36:46 UTC
RemoteUrl: https://github.com/bioc/GeneNetworkBuilder
RemoteRef: RELEASE_3_23
RemoteSha: 4be7f397b52e97614da43fc79c25c93d1d931b1a
NeedsCompilation: yes
Packaged: 2026-04-29 21:33:16 UTC; root
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-29 22:29:51 UTC; unix
