assignDefaultMthds      Assign default processing methods
buildAssayTab           Prepare assay table mapping info
Configure functions     Functions for configuring the gtox package
deleteStudy             Completely remove all data for a study
exportResultForToxpiGUI
                        Create the result table for the asi in input
exportResultTable       Create the result table for the asi in input
glCheckInput            Check validity of input file
glComputeToxInd         Create toxicological indicator values for all
                        chemicals in input
glLoadInput             Check validity of input file
glPlotPie               Pie chart for Minimal Effective Concentrations
                        (MEC) and AC50 plot
glPlotPieLogo           plot package logo
glPlotPosCtrl           Box plot for positive control check
glPlotPosCtrlMEC        Box plot for positive control check
glPlotStat              Box plot for Minimal Effective Concentrations
                        (MEC) and AC50 plot
glPlotToxInd            Plot toxicological indicator values for all
                        chemicals in input
gtoxAddModel            Draw a gtox Model onto an exisiting plot
gtoxAICProb             Calculate the AIC probabilities
gtoxCalcVmad            Calculate and update the assay endpoint cutoff
                        values
gtoxCode2CASN           Convert chemical code to CAS Registry Number
gtoxFit                 Fit the data with the constant, hill, and
                        gain-loss models
gtoxHillACXX            Functions to solve the Hill model
gtoxImportThermoDB      Import data from ThermoDB by study ID
gtoxListFlds            Load the field names for a table
gtoxLoadApid            Load assay plate information
gtoxLoadChem            Load sample/chemical information
gtoxLoadClib            Load chemical library information
gtoxLoadData            Load gtox data
gtoxLoadVehicle         Load vehicle information
gtoxLoadVmad            Load cutoff values for assay endpoints
gtoxLoadWaid            Load well annotation information
gtoxMakeAeidPlts        Create a .pdf with dose-response plots
gtoxMthdAssign          Functions for managing processing methods
gtoxPlotErrBar          Create error bar plots
gtoxPlotFitc            Plot the fit category tree
gtoxPlotFits            Plot summary fits based on fit and
                        dose-response data
gtoxPlotM4ID            Plot fit summary plot by m4id
gtoxPlotPie             Create piechart plots
gtoxPlotPieLgnd         Create piechart plot legend
gtoxPlotPlate           Plot plate heatmap
gtoxPlotWin             Create winning curve plots
gtoxPrepOtpt            Map assay/chemcial ID values to annotation
                        information
gtoxQuery               Wrappers for sending queries and fetching
                        results
gtoxRegister            Functions for registering & updating annotation
                        information
gtoxReport              Generate a report
gtoxRun                 Perform data processing
gtoxSetWllq             Change the well quality for a vector of lvl 0
                        IDs
gtoxSubsetChid          Subset level 5 data to a single sample per
                        chemical
gtoxWriteData           Write screening data into the gtox databases
Load assay information
                        Functions for loading assay information
loadAnnot               Register the annotations provided by GUI
lu                      Abbreviation for 'length(unique(x))'
lw                      Abbreviation for 'length(which(x))'
Models                  Model objective functions
prepareDatForDB         Assign default processing methods
