Package: GreyListChIP
Type: Package
Version: 1.44.0
Title: Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
Date: 2025-07-22
Authors@R: c(person("Matt","Eldridge", email="matthew.eldridge@cruk.cam.ac.uk",
                  role = c("cre")),
             person("Gord","Brown",email="DECEASED",
                  role="aut"))
Description: Identify regions of ChIP experiments with high signal in
        the input, that lead to spurious peaks during peak calling.
        Remove reads aligning to these regions prior to peak calling,
        for cleaner ChIP analysis.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 4.0), methods, GenomicRanges
Imports: GenomicAlignments, BSgenome, Rsamtools, rtracklayer, MASS,
        parallel, Seqinfo, SummarizedExperiment, stats, utils
Suggests: BiocStyle, BiocGenerics, RUnit, BSgenome.Hsapiens.UCSC.hg19
biocViews: ChIPSeq, Alignment, Preprocessing, DifferentialPeakCalling,
        Sequencing, GenomeAnnotation, Coverage
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:40:30 UTC
RemoteUrl: https://github.com/bioc/GreyListChIP
RemoteRef: RELEASE_3_23
RemoteSha: 2030b1493ad45e55a4e35dcf53f2205056532f82
NeedsCompilation: no
Packaged: 2026-04-29 22:16:27 UTC; root
Author: Matt Eldridge [cre],
  Gord Brown [aut]
Maintainer: Matt Eldridge <matthew.eldridge@cruk.cam.ac.uk>
Built: R 4.6.0; ; 2026-04-29 23:24:59 UTC; unix
