# Generated by roxygen2: do not edit by hand

export(MirnaExperiment)
export(addDifferentialExpression)
export(augmentedPathways)
export(batchCorrection)
export(enrichGenes)
export(enrichTargets)
export(enrichedFeatures)
export(enrichmentBarplot)
export(enrichmentDatabase)
export(enrichmentDotplot)
export(enrichmentMethod)
export(enrichmentMetric)
export(enrichmentResults)
export(findMirnaSNPs)
export(geneDE)
export(geneSet)
export(getEvidence)
export(getTargets)
export(gseaPlot)
export(gseaRidgeplot)
export(integratedPathways)
export(integration)
export(integrationDatabase)
export(integrationDotplot)
export(listPathways)
export(loadExamples)
export(mirVariantPlot)
export(mirnaDE)
export(mirnaIntegration)
export(mirnaTargets)
export(pairedSamples)
export(performGeneDE)
export(performMirnaDE)
export(plotCorrelation)
export(plotDE)
export(plotDimensions)
export(plotVolcano)
export(preparePathways)
export(searchDisease)
export(setTargets)
export(significantGenes)
export(significantMirnas)
export(supportedOrganisms)
export(topologicalAnalysis)
export(visualizeNetwork)
exportClasses(FunctionalEnrichment)
exportClasses(IntegrativePathwayAnalysis)
exportClasses(MirnaExperiment)
exportMethods(augmentedPathways)
exportMethods(enrichedFeatures)
exportMethods(enrichmentDatabase)
exportMethods(enrichmentMethod)
exportMethods(enrichmentMetric)
exportMethods(enrichmentResults)
exportMethods(geneDE)
exportMethods(geneSet)
exportMethods(integratedPathways)
exportMethods(integration)
exportMethods(integrationDatabase)
exportMethods(mirnaDE)
exportMethods(mirnaTargets)
exportMethods(pairedSamples)
exportMethods(show)
exportMethods(significantGenes)
exportMethods(significantMirnas)
import(MultiAssayExperiment)
import(ggplot2)
import(methods)
importFrom(BiocParallel,"bpprogressbar<-")
importFrom(BiocParallel,"bptasks<-")
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpmapply)
importFrom(BiocParallel,bpnworkers)
importFrom(BiocParallel,bpoptions)
importFrom(BiocParallel,bpparam)
importFrom(BiocParallel,bpprogressbar)
importFrom(BiocParallel,bptasks)
importFrom(MultiAssayExperiment,MultiAssayExperiment)
importFrom(Rcpp,sourceCpp)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,text)
importFrom(rlang,.data)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,dbinom)
importFrom(stats,dhyper)
importFrom(stats,lm)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,optimize)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,relevel)
importFrom(stats,reorder)
importFrom(stats,residuals)
importFrom(stats,sd)
importFrom(stats,terms)
importFrom(utils,getFromNamespace)
importFrom(utils,read.table)
importMethodsFrom(MultiAssayExperiment,show)
useDynLib(MIRit, .registration = TRUE)
