# Generated by roxygen2: do not edit by hand

export(cor_dnam_target_gene)
export(cor_tf_target_gene)
export(create_triplet_distance_based)
export(create_triplet_regulon_based)
export(export_results_to_table)
export(filter_dnam_by_quant_diff)
export(filter_exp_by_quant_mean_FC)
export(filter_genes_zero_expression)
export(get_human_tfs)
export(get_met_probes_info)
export(get_promoter_avg)
export(get_region_target_gene)
export(get_residuals)
export(get_tf_ES)
export(get_tf_in_region)
export(interaction_model)
export(make_dnam_se)
export(make_exp_se)
export(make_granges_from_names)
export(make_names_from_granges)
export(methReg_analysis)
export(plot_interaction_model)
export(readRemap2022)
export(stratified_model)
import(GenomicRanges)
import(openxlsx)
import(sesame)
importFrom(AnnotationHub,query)
importFrom(DelayedArray,colSums)
importFrom(ExperimentHub,ExperimentHub)
importFrom(GenomicRanges,"strand<-")
importFrom(GenomicRanges,distance)
importFrom(GenomicRanges,distanceToNearest)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,nearest)
importFrom(GenomicRanges,promoters)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(IRanges,extractList)
importFrom(IRanges,psetdiff)
importFrom(IRanges,subsetByOverlaps)
importFrom(IRanges,width)
importFrom(JASPAR2024,JASPAR2024)
importFrom(JASPAR2024,db)
importFrom(MASS,psi.bisquare)
importFrom(MASS,rlm)
importFrom(RSQLite,dbConnect)
importFrom(RSQLite,dbDisconnect)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(S4Vectors,values)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,rowRanges)
importFrom(TFBSTools,getMatrixSet)
importFrom(dplyr,"%>%")
importFrom(dplyr,all_of)
importFrom(dplyr,any_vars)
importFrom(dplyr,bind_rows)
importFrom(dplyr,contains)
importFrom(dplyr,filter)
importFrom(dplyr,filter_at)
importFrom(dplyr,group_by)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,vars)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggpubr,ggarrange)
importFrom(ggpubr,ggscatter)
importFrom(ggpubr,ggtexttable)
importFrom(ggpubr,stat_cor)
importFrom(ggpubr,ttheme)
importFrom(methods,as)
importFrom(methods,is)
importFrom(plyr,.)
importFrom(plyr,adply)
importFrom(progress,progress_bar)
importFrom(pscl,zeroinfl)
importFrom(readr,read_csv)
importFrom(rlang,.data)
importFrom(sesameData,sesameDataCacheAll)
importFrom(sesameData,sesameDataGet)
importFrom(sfsmisc,f.robftest)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,cor.test)
importFrom(stats,lm)
importFrom(stats,na.exclude)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pt)
importFrom(stats,quantile)
importFrom(stats,rstudent)
importFrom(stats,wilcox.test)
importFrom(stringr,str_c)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidyr,separate)
importFrom(tidyr,unite)
importFrom(utils,head)
