junctionA	junctionB	sample	expectedSeq.confirmedWithBLASTP	junctionType.A	junctionType.B	identifier
21:39817545:-	21:42870045:-	testSJ	HIEHSRYLSLLDAVDNSKMALNSEALSVVSEDQSLFECAYGTPHLAKTEMTASSSSDYGQTSKMSPRVPQQDWLSQPPARVTIKMECNPSQVNGS	Known 5' CDS-junction	Known 3' CDS-junction	TMPRSS2 (E2) to ERG (E4)
21:39817542:-	21:42870045:-	testSJ	HIEHSRYLSLLDAVDNSKMALNSALSVVSEDQSLFECAYGTPHLAKTEMTASSSSDYGQTSKMSPRVPQQDWLSQPPARVTIKMECNPSQVNGS	Shortening of known 5' CDS-junction	Known 3' CDS-junction	TMPRSS2 (E2 -3bp) to ERG (E4)
21:39817548:-	21:42870045:-	testSJ	HIEHSRYLSLLDAVDNSKMALNSQEALSVVSEDQSLFECAYGTPHLAKTEMTASSSSDYGQTSKMSPRVPQQDWLSQPPARVTIKMECNPSQVNGS	Extension of known 5' CDS-junction	Known 3' CDS-junction	TMPRSS2 (E2 +3bp) to ERG (E4)
X:66788865:+	X:66863097:+	testSJ	MILWLHSLETARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTCGSCKVFFKRAAE	Known 5' CDS-junction	Known 3' CDS-junction	AR-45 (E1b to E2)
X:66905969:+	X:66909397:+	testSJ	KQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGAAVVVSERILRVFGVSEWLP	Known 5' CDS-junction	Known 3' CDS-junction	AR-V1 (E3 to CE1)
X:66863250:+	X:66900561:+	testSJ	METARDHVLPIDYYFPPQKTCLICGDEASGCHYGALTCGSCKVFFKRAAEGFFRMNKLKES	Known 5' CDS-junction	Possible 3' cryptic CDS due to distance from known junction	AR-V3 (E2 to CE4)
X:66905969:+	X:66914514:+	testSJ	KQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGEKFRVGNCKHLKMTRP	Known 5' CDS-junction	Known 3' CDS-junction	AR-V7 (E3 to CE3)
22:23632601:+	9:133729450:+	testSJ	DESPGLYGFLNVIVHSATGFKQSSKALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITK	Known 5' CDS-junction	Known 3' CDS-junction	BCR (E14) to ABL1 (E2)
7:55087059:+	7:55223522:+	testSJ	MRPSGTAGAALLALLAALCPASRALEEKKGNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRK	Known 5' CDS-junction	Known 3' CDS-junction	EGFRvIII (E1 to E8)
