.checkReferenceAnchor	dot-checkReferenceAnchor
checkProteotypicFragments	checkProteotypicFragments
checkProteotypicFragments,ProteoDiscography-method	checkProteotypicFragments
exportProteoDiscography	exportProteoDiscography
generateJunctionModels	generateJunctionModels
generateProteoDiscography	generateProteoDiscography
getDiscography	getDiscography
getDiscography,ProteoDiscography-method	getDiscography
importGenomicVariants	importGenomicVariants
importGenomicVariants.MAF	importGenomicVariants.MAF
importGenomicVariants.VCF	importGenomicVariants.VCF
importSpliceJunctions	importSpliceJunctions
importTranscriptSequences	importTranscriptSequences
incorporateGenomicVariants	incorporateGenomicVariants
mutantTranscripts	mutantTranscripts
mutantTranscripts,ProteoDiscography-method	setMutantTranscripts
ProteoDiscography-class	ProteoDiscography
ProteoDiscographyExample.hg19	ProteoDiscographyExample.hg19
setGenomicSequences	setGenomicSequences
setGenomicSequences,ProteoDiscography-method	setGenomicSequences
setMutantTranscripts	setMutantTranscripts
setMutantTranscripts,ProteoDiscography-method	setMutantTranscripts
setTxDb	setTxDb
setTxDb,ProteoDiscography-method	setTxDb
