calcContamination       Calculate the level of marker contamination of
                        each cell
calcStateChanges        First layer wrapper function to build linear
                        models measuring state changes
distanceCalculator      Calculate pairwise distance between cell types
getAbundances           Wrapper to calculate imhomogenous K function
                        between a cell and surrounding types on each
                        image
getDistances            Wrapper to calculate pairwise distance between
                        cell types by image
getMarkerMeans          Extract the average expression for all markers
                        for each cell type in each region defined by
                        lisaClust
getParentPhylo          Extract parent and all children from a Phylo
                        object
isKontextual            Test whether an object is a kontextualResult
kerenKontextual         Kontextual results from kerenSCE
kerenSCE                MIBI-TOF Breast cancer intensities
kontextCurve            Evaluation of Kontextual over a range of radii.
kontextPlot             Plotting the original and kontextual L values
                        over a range of radii.
Kontextual              Evaluation of pairwise cell relationships,
                        conditional on a 3rd population.
makeWindow              Creates a window for a PPP object
parentCombinations      Create all combinations of cell type
                        relationships from a list of parents
plotStateChanges        Visualise Cell-Cell Marker Relationships
prepMatrix              Convert Kontextual or state changes result to a
                        matrix for classification
relabelKontextual       Cell permutation for Kontextual
