Package: UCSC.utils
Title: Low-level utilities to retrieve data from the UCSC Genome
        Browser
Description: A set of low-level utilities to retrieve data from the
        UCSC Genome Browser. Most functions in the package access the
        data via the UCSC REST API but some of them query the UCSC
        MySQL server directly. Note that the primary purpose of the
        package is to support higher-level functionalities implemented
        in downstream packages like GenomeInfoDb or txdbmaker.
biocViews: Infrastructure, GenomeAssembly, Annotation,
        GenomeAnnotation, DataImport
URL: https://bioconductor.org/packages/UCSC.utils
BugReports: https://github.com/Bioconductor/UCSC.utils/issues
Version: 1.7.1
License: Artistic-2.0
Encoding: UTF-8
Authors@R: person("Hervé", "Pagès", role=c("aut", "cre"),
	          email="hpages.on.github@gmail.com")
Imports: methods, stats, httr, jsonlite, S4Vectors (>= 0.47.6)
Suggests: DBI, RMariaDB, GenomeInfoDb, testthat, knitr, rmarkdown,
        BiocStyle
VignetteBuilder: knitr
Collate: 00utils.R UCSC.api.url.R REST_API.R list_UCSC_genomes.R
        get_UCSC_chrom_sizes.R list_UCSC_tracks.R
        fetch_UCSC_track_data.R UCSC_dbselect.R zzz.R
Config/pak/sysreqs: libssl-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-12-09 01:19:59 UTC
RemoteUrl: https://github.com/bioc/UCSC.utils
RemoteRef: HEAD
RemoteSha: 54b281b5e78d937794bf243155587a8e2596d065
NeedsCompilation: no
Packaged: 2026-01-04 16:40:59 UTC; root
Author: Hervé Pagès [aut, cre]
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>
Built: R 4.6.0; ; 2026-01-04 16:42:29 UTC; unix
