assess_cell_quality_PCA
                        ASSESS CELL QUALITY USING PCA AND OUTLIER
                        DETECTION
assess_cell_quality_SVM
                        Assess quality of a cell - SVM version
cellity-package         Quality Control for Single-Cell RNA-seq Data
extra_human_genes       Additional human genes that are used in feature
                        extraction
extra_mouse_genes       Additional mouse genes that are used in feature
                        extraction
extract_features        Extracts biological and technical features for
                        given dataset
feature_generation      Helper Function to create all features
feature_info            Information which genes and GO categories
                        should be included as features. Also defines
                        which features are cell-type independent
                        (common features)
mES1_features           Real test dataset containing all and common
                        features from the paper (mES1)
mES1_labels             Real test dataset containing annotation of
                        cells
multiplot               Internal multiplot function to combine plots
                        onto a grid
normalise_by_factor     Internal function to normalize by library size
param_mES_all           Parameters used for SVM classification
param_mES_common        Parameters used for SVM classification
plot_pca                Plots PCA of all features. Colors high and low
                        quality cells based on outlier detection.
sample_counts           Sample gene expression data containing 40 cells
sample_stats            Sample read statistics data containing 40 cells
simple_cap              Converts all first letters to capital letters
sum_prop                Sums up normalised values of genes to groups.
training_mES_features   Original training dataset containing all and
                        common features from the paper (training mES)
training_mES_labels     Original training dataset containing annotation
                        of cells
uni.plot                Internal function to detect outliers from the
                        mvoultier pacakge Modified slightly so that
                        plots are not printed
