buildClusterTree        Perform hierarchical clustering on reducedDim
clr                     Centered log ratio transform
clrInv                  Inverse of Centered log ratio transform
crumblr                 Count ratio uncertainty modeling based linear
                        regression
crumblr-package         crumblr
diffTree                Compare difference in estimates between two
                        trees
dmn_mle                 MLE for Dirichlet Multinomial
IFNCellCounts           Cell counts following interferon treatment
logFrac                 Log fractions and precision weights
meanSdPlot              Plot row standard deviations versus rank of row
                        means
plotForest              Forest plot
plotScatterDensity      Scatter plot with 2D density using viridis
                        colors
plotTreeTest            Plot tree with results from multivariate
                        testing
plotTreeTestBeta        Plot tree coefficients from multivariate
                        testing
standardize             Standardize observations using precision
                        weights
treeTest                Perform multivariate testing along a hierarchy
