R: Simulation and Deconvolution of Omic Profiles

# Simulation and Deconvolution of Omic Profiles

## Documentation for package ‘deconvR’ version 1.18.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

BSmeth2Probe | A function to map WGBS methylation data to Illumina Probe IDs
deconvolute | A function to deconvolute of bulk samples to their origin proportions using data from reference atlas (e.g. methylation signatures) Results of model are returned in dataframe "results". Summary of partial R-squared values of model (min, median, mean, max) are printed upon completion.
findSignatures | A function to construct a signature matrix
HumanCellTypeMethAtlas | The comprehensive human methylome reference atlas
IlluminaMethEpicB5ProbeIDs | A dataset Illumina probe IDs of 400000 genomic loci (identified using the “seqnames”, “ranges”, and “strand” values).
simulateCellMix | A function to generate a dataframe of mixed cell-type origin simulated samples using given reference atlas.