bet.coinertia           Between class coinertia analysis
between.graph           Plot 1D graph of results from between group
                        analysis
bga                     Between group analysis
bga.jackknife           Jackknife between group analysis
bga.suppl               Between group analysis with supplementary data
                        projection
cia                     Coinertia analysis: Explore the covariance
                        between two datasets
commonMap               Plot highlights common points between two 1D
                        plots (biparitite)
comparelists            Return the intersect, difference and union
                        between 2 vectors
do3d                    Generate 3D graph(s) using scatterplot3d
getcol                  Specialised colour palette with set of 21
                        maximally contrasting colours
graph1D                 Plot 1D graph of axis from multivariate
                        analysis
heatplot                Draws heatmap with dendrograms.
html3D                  Produce web page with a 3D graph that can be
                        viewed using Chime web browser plug-in, and/or
                        a pdb file that can be viewed using Rasmol
isDataFrame             Converts microarray input data into a data
                        frame suitable for analysis in ADE4.
khan                    Microarray gene expression dataset from Khan et
                        al., 2001. Subset of 306 genes.
NCI60                   Microarray gene expression profiles of the NCI
                        60 cell lines
ord                     Ordination
overview                Draw boxplot, histogram and hierarchical tree
                        of gene expression data
plotarrays              Graph xy plot of variable (array) projections
                        from ordination, between group analysis or
                        coinertia analysis.
plotgenes               Graph xy plot of variable (gene) projections
                        from PCA or COA. Only label variables at ends
                        of axes
prettyDend              Draw hierarchical tree of gene expression data
                        with a colorbar for numerous class vectors
randomiser              Randomly reassign training and test samples
sumstats                Summary statistics on xy co-ordinates, returns
                        the slopes and distance from origin of each
                        co-ordinate.
suppl                   Projection of supplementary data onto axes from
                        a between group analysis
topgenes                Topgenes, returns a list of variables at the
                        ends (positive, negative or both) of an axis
