R: Paired DGE and DGS analysis for gene set enrichment analysis

# Paired DGE and DGS analysis for gene set enrichment analysis

## Documentation for package ‘pairedGSEA’ version 1.12.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

example_diff_result | Output of running paired_diff on example_se.
example_gene_sets | MSigDB gene sets from humans, category C5 with ensemble gene IDs
example_ora_results | Output of running paired_ora on example_diff_result and gene sets extracted from MSigDB
example_se | A small subset of the GEO:GSE61220 data set.
paired_diff | Run paired DESeq2 and DEXSeq analyses
paired_ora | Paired Over-Representation Analysis
plot_ora | Scatter plot of Over-Representation Analysis results
prepare_msigdb | Load MSigDB and convert to names list of gene sets