Package: prebs
Title: Probe region expression estimation for RNA-seq data for improved
        microarray comparability
Description: The prebs package aims at making RNA-sequencing (RNA-seq)
        data more comparable to microarray data. The comparability is
        achieved by summarizing sequencing-based expressions of probe
        regions using a modified version of RMA algorithm. The pipeline
        takes mapped reads in BAM format as an input and produces
        either gene expressions or original microarray probe set
        expressions as an output.
Version: 1.52.0
Author: Karolis Uziela and Antti Honkela
Maintainer: Karolis Uziela <karolis.uziela@scilifelab.se>
Depends: R (>= 2.14.0), GenomicAlignments, affy, RPA
Imports: parallel, methods, stats, GenomicRanges (>= 1.13.3), IRanges,
        Biobase, Seqinfo, S4Vectors
Suggests: prebsdata, hgu133plus2cdf, hgu133plus2probe
License: Artistic-2.0
Collate: 'PREBS.R'
biocViews: ImmunoOncology, Microarray, RNASeq, Sequencing,
        GeneExpression, Preprocessing
Config/pak/sysreqs: cmake libglpk-dev make libbz2-dev libicu-dev
        liblzma-dev libuv1-dev libxml2-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:37:38 UTC
RemoteUrl: https://github.com/bioc/prebs
RemoteRef: RELEASE_3_23
RemoteSha: 4f6f3e639423785a03587f847ca5ba1d49402fca
NeedsCompilation: no
Packaged: 2026-04-29 23:58:15 UTC; root
Built: R 4.6.0; ; 2026-04-30 01:34:21 UTC; unix
