# Generated by roxygen2: do not edit by hand

export(AddMetaData)
export(AllCloseByRegions)
export(AllCoeditedRegions)
export(AnnotateResults)
export(CountSamplesPerGroup)
export(CreateEditingTable)
export(CreateOutputDF)
export(CreateRdrop)
export(FindCorrelatedRegions)
export(GetMinPairwiseCor)
export(GetSitesLocations)
export(MakeModelFormula)
export(MarkCoeditedSites)
export(MaxSites)
export(MeanSites)
export(MedianSites)
export(OrderSitesByLocation)
export(PC1Sites)
export(PlotEditingCorrelations)
export(SingleCloseByRegion)
export(SingleCoeditedRegion)
export(SitesToRegion)
export(SummarizeAllRegions)
export(SummarizeSingleRegion)
export(TestAssociations)
export(TestSingleRegion)
export(TransformToGR)
importFrom(BiocGenerics,start)
importFrom(Seqinfo,seqnames)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(IRanges,IRanges)
importFrom(IRanges,subsetByOverlaps)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,subjectHits)
importFrom(bumphunter,clusterMaker)
importFrom(bumphunter,getSegments)
importFrom(corrplot,corrplot)
importFrom(logistf,logistf)
importFrom(plyr,adply)
importFrom(plyr,alply)
importFrom(stats,aggregate)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,coef)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,drop1)
importFrom(stats,gaussian)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,vcov)
importFrom(survival,Surv)
importFrom(survival,coxph)
