# Generated by roxygen2: do not edit by hand

S3method(print,summary.scLANE)
S3method(summary,scLANE)
export(bootstrapRandomEffects)
export(chooseCandidateGenes)
export(clusterGenes)
export(createCellOffset)
export(embedGenes)
export(enrichDynamicGenes)
export(extractBreakpoints)
export(fitGLMM)
export(geneProgramDrivers)
export(geneProgramScoring)
export(geneProgramSignificance)
export(getFittedValues)
export(getKnotDist)
export(getResultsDE)
export(marge2)
export(nbGAM)
export(npConvolve)
export(plotClusteredGenes)
export(plotModelCoefs)
export(plotModels)
export(smoothedCountsMatrix)
export(sortGenesHeatmap)
export(sortObservations)
export(summarizeModel)
export(testDynamic)
export(testSlope)
export(theme_scLANE)
import(RcppEigen)
import(glm2)
import(magrittr)
importFrom(MASS,ginv)
importFrom(MASS,glm.nb)
importFrom(MASS,negative.binomial)
importFrom(MASS,theta.mm)
importFrom(Matrix,Matrix)
importFrom(Matrix,bdiag)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,t)
importFrom(Rcpp,sourceCpp)
importFrom(RcppEigen,fastLmPure)
importFrom(bigstatsr,as_FBM)
importFrom(broom.mixed,tidy)
importFrom(doSNOW,registerDoSNOW)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,c_across)
importFrom(dplyr,case_when)
importFrom(dplyr,contains)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,if_else)
importFrom(dplyr,inner_join)
importFrom(dplyr,lag)
importFrom(dplyr,lead)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,slice_head)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(dplyr,with_groups)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(foreach,registerDoSEQ)
importFrom(furrr,future_imap)
importFrom(furrr,future_map)
importFrom(future,multisession)
importFrom(future,plan)
importFrom(future,sequential)
importFrom(gamlss,LR.test)
importFrom(gamlss,gamlss)
importFrom(gamlss,gamlss.control)
importFrom(gamlss,pb)
importFrom(gamlss,random)
importFrom(geeM,geem)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(glmmTMB,glmmTMB)
importFrom(glmmTMB,glmmTMBControl)
importFrom(glmmTMB,nbinom2)
importFrom(glmmTMB,ranef)
importFrom(mpath,glmregNB)
importFrom(parallel,clusterEvalQ)
importFrom(parallel,clusterExport)
importFrom(parallel,clusterSetRNGStream)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(purrr,discard)
importFrom(purrr,imap)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_dfr)
importFrom(purrr,pmap_dfc)
importFrom(purrr,reduce)
importFrom(scales,label_comma)
importFrom(scales,label_number)
importFrom(splines,bs)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,convolve)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,cutree)
importFrom(stats,deviance)
importFrom(stats,fitted)
importFrom(stats,fitted.values)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,logLik)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,offset)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,pchisq)
importFrom(stats,predict)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,setNames)
importFrom(stats,simulate)
importFrom(stats,update)
importFrom(stats,vcov)
importFrom(tidyr,pivot_longer)
importFrom(tidyselect,everything)
importFrom(tidyselect,starts_with)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importFrom(withr,with_output_sink)
useDynLib(scLANE, .registration = TRUE)
