# Generated by roxygen2: do not edit by hand

export(addCor)
export(addCovCor)
export(addCovToGR)
export(addInteractionSupport)
export(addMotifScore)
export(addStrandCombination)
export(getCisPairs)
export(parseLoopsRao)
export(parseLoopsTang)
export(predLoops)
export(prepareCisPairs)
import(InteractionSet)
import(data.table)
importFrom(BiocGenerics,"start<-")
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,sort)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,strand)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,coverage)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,resize)
importFrom(GenomicRanges,slidingWindows)
importFrom(IRanges,IRanges)
importFrom(IRanges,NumericList)
importFrom(IRanges,overlapsAny)
importFrom(IRanges,trim)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(Seqinfo,"seqinfo<-")
importFrom(Seqinfo,"seqlevels<-")
importFrom(Seqinfo,seqinfo)
importFrom(Seqinfo,seqlengths)
importFrom(Seqinfo,seqlevels)
importFrom(Seqinfo,seqlevelsInUse)
importFrom(Seqinfo,seqnames)
importFrom(methods,is)
