Package: Cogito
Type: Package
Title: Compare genomic intervals tool - Automated, complete,
        reproducible and clear report about genomic and epigenomic data
        sets
Version: 1.18.0
Date: 2025-07-28
Authors@R: person("Annika", "Bürger", email="a.buerger@uni-muenster.de",
    role=c("cre", "aut"))
Description: Biological studies often consist of multiple conditions 
    which are examined with different laboratory set ups like RNA-sequencing or 
    ChIP-sequencing. To get an overview about the whole resulting data set, 
    Cogito provides an automated, complete, reproducible and clear report about 
    all samples and basic comparisons between all different samples. This report
    can be used as documentation about the data set or as starting point for 
    further custom analysis.
License: LGPL-3
Encoding: UTF-8
LazyData: TRUE
Depends: R (>= 4.1), GenomicRanges, jsonlite, GenomicFeatures, entropy
Imports: BiocManager, rmarkdown, Seqinfo, S4Vectors, AnnotationDbi,
        graphics, stats, utils, methods, magrittr, ggplot2,
        TxDb.Mmusculus.UCSC.mm9.knownGene
biocViews: FunctionalGenomics, GeneRegulation, Software, Sequencing
Suggests: BiocStyle, knitr, markdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/Cogito
git_branch: RELEASE_3_23
git_last_commit: 3c485cf
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
Packaged: 2026-04-28 21:45:38 UTC; biocbuild
Author: Annika Bürger [cre, aut]
Maintainer: Annika Bürger <a.buerger@uni-muenster.de>
Built: R 4.6.0; ; 2026-04-29 04:37:54 UTC; unix
