AggregateDataByBatch    Aggregates feature expression by cell clusters,
                        per batch if provided.
BinCellClusterProbability
                        Bin cell cluster probability
CellBinsFeatureCorrelation
                        Cell bins feature correlation
CellClusterProbabilityDistribution
                        Cell cluster probability distribution
FindAllClusterMarkers   Identification of feature markers for all
                        clusters
FindClusterMarkers      Differential expression between cell clusters
GetCellClusterProbability
                        Get ICP cell cluster probability
GetFeatureCoefficients
                        Get feature coefficients
HeatmapFeatures         Heatmap visualization of the expression of
                        features by clusters
MajorityVotingFeatures
                        Majority voting features by label
PCAElbowPlot            Elbow plot of the standard deviations of the
                        principal components
PlotClusterTree         Plot cluster tree
PlotDimRed              Plot dimensional reduction categorical
                        variables
PlotExpression          Plot dimensional reduction feature expression
PrepareData             Prepare 'SingleCellExperiment' object for
                        analysis
ReferenceMapping        Reference mapping
RunPCA                  Principal Component Analysis
RunParallelDivisiveICP
                        Multi-level integration
RunTSNE                 Barnes-Hut implementation of t-Distributed
                        Stochastic Neighbor Embedding (t-SNE)
RunUMAP                 Uniform Manifold Approximation and Projection
                        (UMAP)
SummariseCellClusterProbability
                        Summarise ICP cell cluster probability
TabulateCellBinsByGroup
                        Tabulate cell bins by group
VlnPlot                 Visualization of feature expression using
                        violin plots
