Package for CTDbase data query, visualization and downstream
analysis
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Documentation for package ‘CTDquerier’ version 2.16.0
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| CTDdata | Class CTDdata |
| CTDdata-class | Class CTDdata |
| CTDquerier | Package for CTDbase data query, data visualization and data analysis. |
| download_ctd_chem | Function to download checmicals available in CTDbase |
| download_ctd_dise | Function to download diseases available in CTDbase |
| download_ctd_genes | Function to download genes available in CTDbase |
| enrich | Method to perform enrichment analysis using two 'CTDdata' objects |
| enrich-method | Class CTDdata |
| gala | 'CTDdata' for ilustrative purpouses |
| get_table | Method to obtain a specific inner table from a 'CTDdata' object. |
| get_table-method | Class CTDdata |
| get_terms | Getter to obtain the terms used to perform a query into CTDbase |
| get_terms-method | Class CTDdata |
| leaf_plot | Function to create a leaf plot |
| load_ctd_chem | Function to load the '.tsv.gz' file for chemicals |
| load_ctd_dise | Function to load the '.tsv.gz' file for disease |
| load_ctd_gene | Function to load the '.tsv.gz' file for genes |
| plot-method | Class CTDdata |
| query_ctd_chem | Function to query CTDbase using chemical terminology ( Chemical Name ) |
| query_ctd_dise | Function to query CTDbase using disease terminology |
| query_ctd_gene | Function to query CTDbase using gene terminology ( Gene Symbol ) |