adj2el	adj2el
adj2regulon	adj2regulon
adjMatToElist	adjMatToElist
alpaca	alpaca
alpacaCommunityStructureRotation	alpacaCommunityStructureRotation
alpacaComputeDifferentialScoreFromDWBM	alpacaComputeDifferentialScoreFromDWBM
alpacaComputeDWBMmatmScale	alpacaComputeDWBMmatmScale
alpacaComputeWBMmat	alpacaComputeWBMmat
alpacaCrane	alpacaCrane
alpacaDeltaZAnalysis	alpacaDeltaZAnalysis
alpacaDeltaZAnalysisLouvain	alpacaDeltaZAnalysisLouvain
alpacaExtractTopGenes	alpacaExtractTopGenes
alpacaGenLouvain	alpacaGenLouvain
alpacaGetMember	alpacaGetMember
alpacaGOtabtogenes	alpacaGOtabtogenes
alpacaGoToGenes	alpacaGoToGenes
alpacaListToGo	alpacaListToGo
alpacaMetaNetwork	alpacaMetaNetwork
alpacaNodeToGene	alpacaNodeToGene
alpacaObjectToDfList	alpacaObjectToDfList
alpacaRotationAnalysis	alpacaRotationAnalysis
alpacaRotationAnalysisLouvain	alpacaRotationAnalysisLouvain
alpacaSimulateNetwork	alpacaSimulateNetwork
alpacaTestNodeRank	alpacaTestNodeRank
alpacaTidyConfig	alpacaTidyConfig
alpacaTopEnsembltoTopSym	alpacaTopEnsembltoTopSym
alpacaWBMlouvain	alpacaWBMlouvain
annotateFromBiomart	annotateFromBiomart
bladder	bladder
BuildSubnetwork	BuildSubnetwork
CalculatePValues	CalculatePValues
checkMisAnnotation	checkMisAnnotation
checkTissuesToMerge	checkTissuesToMerge
cobra	cobra
condorCluster	condorCluster
condorCoreEnrich	condorCoreEnrich
condorCreateObject	condorCreateObject
condorMatrixModularity	condorMatrixModularity
condorModularityMax	condorModularityMax
condorPlotCommunities	condorPlotCommunities
condorPlotHeatmap	condorPlotHeatmap
condorQscore	condorQscore
condorRun	condorRun
craneBipartite	craneBipartite
craneUnipartite	craneUnipartite
createCondorObject	createCondorObject
degreeAdjust	degreeAdjust
domonster	domonster
downloadGTEx	downloadGTEx
dragon	dragon
el2adj	el2adj
el2regulon	el2regulon
elistAddTags	elistAddTags
elistIsEdgeOrderEqual	elistIsEdgeOrderEqual
elistRemoveTags	elistRemoveTags
elistSort	elistSort
elistToAdjMat	elistToAdjMat
exon.size	exon.size
extractMatrix	extractMatrix
filterGenes	filterGenes
filterLowGenes	filterLowGenes
filterMissingGenes	filterMissingGenes
filterSamples	filterSamples
FindConnectionsForAllHopCounts	FindConnectionsForAllHopCounts
FindSignificantEdgesForHop	FindSignificantEdgesForHop
GenerateNullPANDADistribution	GenerateNullPANDADistribution
genes	genes
gsea_categorical	gsea_categorical
gsea_numeric	gsea_numeric
isElist	isElist
jutterDegree	jutterDegree
lioness	lioness
lionessPy	lionessPy
monster	monster
monsterBereFull	monsterBereFull
monsterCalculateTmPValues	monsterCalculateTmPValues
monsterCalculateTmStats	monsterCalculateTmStats
monsterCheckDataType	monsterCheckDataType
monsterdTFIPlot	monsterdTFIPlot
monsterGetTm	monsterGetTm
monsterHclHeatmapPlot	monsterHclHeatmapPlot
monsterMonsterNI	monsterMonsterNI
monsterPlotMonsterAnalysis	monsterPlotMonsterAnalysis
monsterPrintMonsterAnalysis	monsterPrintMonsterAnalysis
monsterRes	monsterRes
monsterTransformationMatrix	monsterTransformationMatrix
monsterTransitionNetworkPlot	monsterTransitionNetworkPlot
monsterTransitionPCAPlot	monsterTransitionPCAPlot
mut.ucec	mut.ucec
normalizeTissueAware	normalizeTissueAware
otter	otter
pandaDiffEdges	pandaDiffEdges
pandaPy	pandaPy
pandaToAlpaca	pandaToAlpaca
pandaToCondorObject	pandaToCondorObject
plotCMDS	plotCMDS
plotDensity	plotDensity
plotHeatmap	plotHeatmap
PlotNetwork	PlotNetwork
priorPp	priorPp
puma	puma
qsmooth	qsmooth
qstats	qstats
RunBLOBFISH	RunBLOBFISH
runEgret	runEgret
sambar	sambar
sambarConvertgmt	sambarConvertgmt
sambarCorgenelength	sambarCorgenelength
sambarDesparsify	sambarDesparsify
seahorse	seahorse
SignificantBreadthFirstSearch	SignificantBreadthFirstSearch
skin	skin
small1976	small1976
sourcePPI	sourcePPI
spider	spider
tiger	tiger
TIGER_expr	TIGER_expr
TIGER_prior	TIGER_prior
yeast	yeast
