# An R package estimates the correlations of orthologs and transposable elements between two species

## Documentation for package ‘TEKRABber’ version 1.16.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

appTEKRABber | appTEKRABber
corrOrthologTE | Estimate correlation comparing orthologs and TEs
ctInputDE | Input expression data of gene/TE for differentially expressed analysis within same species
DECorrInputs | Generate all the input files for TEKRABber downstream analysis
DEgeneTE | Estimate differentially expressed genes and TEs
fetchDataHmChimp | Example output comparing human and chimpanzee data using orhtologScale()
hg38_panTro6_rmsk | Repeatmasker track annotations with human and chimpanzee
orthologScale | Normalized orthologous genes and TEs between two species
prepareRMSK | Prepare a table from two species RepeatMakser track from UCSC genome Table
rcpp_corr | Estimate the correlation between genes and transposable elements
speciesCounts | Gene/TE expression data from human/chimpanzee brain RNA-seq
TEKRABber | An R package estimates the correlations of orthologs and transposable elements between two species