.check_against_single_template_sheet
                        Evaluate if template file with single sheet is
                        present, if the name of the sheet is correct
                        and if it can be fixed
are_template_sheets_valid
                        are template sheet valid?
check_metadata_against_spaces
                        Check metadata against spaces
check_metadata_field_names
                        Check metadata field names
check_metadata_headers
                        Check whether metadata headers are correct and
                        make fixes if needed
check_metadata_names    check_metadata_names
check_metadata_req_col_names
                        Check metadata for required column names
convert_LEVEL5_prism_to_gDR_input
                        Load, convert and process the level 5 PRISM
                        data into a gDR input
convert_LEVEL6_prism_to_gDR_input
                        Load, convert and process the level 6 PRISM
                        data into a gDR input
convert_MAE_to_PSet     Convert MultiAssayExperiment to
                        TreatmentResponseExperiment
convert_pset_to_df      Convert a PharmacoSet to a data.table that is
                        prepare for input into gDR pipeline
correct_template_sheets
                        Correct names of the template sheets (if
                        required)
detect_file_format      Detect format of results data
enhance_raw_edited_EnVision_df
                        Enhance raw edited EnVision data.table
fix_typos_with_reference
                        Fix typos using reference data
gdr_test_data-class     gDR Test Data object
getPSet                 Get PharmacoSet
get_EnVision_properties
                        Get properties of EnVision data
get_df_from_raw_edited_EnVision_df
                        Get final results (as a data.table) from raw
                        edited EnVision data.table
get_df_from_raw_unedited_EnVision_df
                        Get final results (as a data.table) from raw
                        unedited EnVision data.table
get_excel_sheet_names   get Excel sheets names for a charvec of files
                        for non-Excel files return 0
get_exception_data      get exception data
get_expected_template_sheets
                        Get names of the sheets expected in templates
                        xlsx
get_plate_info_from_template_xlsx
                        Get plate info from template xlsx
get_test_D300_data      get test D300 data
get_test_EnVision_data
                        get test EnVision data
get_test_Tecan_data     get test Tecan data
get_test_data           get primary test data
get_test_tsv_data       get test tsv data
get_xl_sheets           Get Excel sheets
import_D300             Import D300
is_readable_v           is_readable_v Check if all paths in vector are
                        readable
load_data               Load data
load_manifest           Load manifest
load_results            Load results
load_results_EnVision   Load EnVision results from xlsx
load_results_EnVision_new
                        Load results from EnVision_new (CSV and XLSX)
load_results_Incucyte   Load incucyte results from plain text
load_results_Tecan      Load tecan results from xlsx
load_results_tsv        Load results from tsv
load_templates          Load templates
load_templates_tsv      Load templates from tsv
load_templates_xlsx     Load templates from xlsx
manifest_path           Method manifest_path
mgrepl                  grep wrapper to support multiple patterns
parse_D300_xml          Parse D300
read_EnVision_delim     Read EnVision delimited text files
read_EnVision_xlsx      Read in single xlsx data from EnVision
read_excel_to_dt        Read excel file and transorm it into data.table
                        object
read_in_EnVision_file   Read EnVision file
read_in_manifest_file   read manifest files
read_in_result_files    Read in results files
read_in_results_Tecan   read in Tecan data
read_in_template_sheet_xlsx
                        Read in data from xlsx template sheet
read_in_template_xlsx   Read in xlsx template files
read_in_tsv_template_files
                        read in tsv template files
read_ref_data           read_ref_data
result_path             Method result_path
save_drug_info_per_well
                        for each drug create a Gnumber and
                        Concentration information for each well
setEnvForPSet           Adjust environment variables to meet gDR
                        standards
standardize_record_values
                        standardize_record_values
template_path           Method template_path
validate_template_xlsx
                        Validate template xlsx data
