annotate_paths	annotate_paths
brca	brca
brca_data	brca_data
brca_design	brca_design
comp	comp
create_report	create_report
DAcomp	DAcomp
DAdata	DAdata
DAoverview	DAoverview
DAreport	DAreport
DAsummary	DAsummary
DAtop	DAtop
define_colors	define_colors
do_pca	do_pca
do_wilcoxon	do_wilcoxon
exp_data	exp_data
get_file	get_file
get_go_names	get_go_names
get_highest_sig_ancestor	get_highest_sig_ancestor
get_nodes_data	get_nodes_data
get_node_names	get_node_names
get_paths_data	get_paths_data
get_pathways_annotations	get_pathways_annotations
get_pathways_list	get_pathways_list
get_pathways_summary	get_pathways_summary
get_pathway_functions	get_pathway_functions
get_path_names	get_path_names
go_vals	go_vals
heatmap_plot	heatmap_plot
hhead	hhead
hidata	hidata
hipathia	hipathia
igraphs_upgrade	igraphs_upgrade
is_accepted_species	is_accepted_species
load_annofuns	load_annofuns
load_annots	load_annots
load_entrez_hgnc	load_entrez_hgnc
load_gobp_frame	load_gobp_frame
load_gobp_net	load_gobp_net
load_mgi	load_mgi
load_pathways	load_pathways
load_pseudo_mgi	load_pseudo_mgi
load_xref	load_xref
mgi_from_sif	mgi_from_sif
multiple_pca_plot	multiple_pca_plot
node_color	node_color
node_color_per_de	node_color_per_de
normalize_data	normalize_data
normalize_paths	normalize_paths
paths_to_go_ancestor	paths_to_go_ancestor
pathways	pathways
pathway_comparison_plot	pathway_comparison_plot
path_vals	path_vals
pca_plot	pca_plot
plotVG	plotVG
quantify_terms	quantify_terms
results	results
save_results	save_results
top_pathways	top_pathways
translate_data	translate_data
translate_matrix	translate_matrix
visualize_report	visualize_report
