# Integrative clustering of multi-type genomic data

## Documentation for package ‘iClusterPlus’ version 1.47.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Code demos. Use demo() to run them.
- Package NEWS

## Help Pages

breast.chr17 | Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
clin4 | Uveal Melanoma data
cn | Uveal Melanoma data
CNregions | A function to remove redundant copy number regions
compute.pod | A function to compute the proportion of deviation from perfect block diagonal matrix
coord | genomic coordinates
gbm | GBM data
gbm.exp | GBM data
gbm.mut | GBM data
gbm.seg | GBM data
getBIC | Utility functions for iClusterPlus package
getClusters | Utility functions for iClusterPlus package
getDevR | Utility functions for iClusterPlus package
glp | good lattice points using the uniform design
iCluster | Integrative clustering of multiple genomic data types
iCluster2 | Integrative clustering of multiple genomic data types
iCluster2b | Integrative clustering of multi-omics data
iClusterBayes | Integrative clustering of multiple genomic data types
iClusterBayes2 | Integrative clustering of multi-omics data
iClusterPlus | Integrative clustering of multiple genomic data types
iClusterPlus2 | Integrative clustering of multi-omics data
iManual | Utility functions for iClusterPlus package
methy25 | Uveal Melanoma data
methy25Anno | Uveal Melanoma data
mrna25 | Uveal Melanoma data
mut02 | Uveal Melanoma data
pcaVarPlot | A function to make PCA variance plot of the combined matrix of multi-omics data matrices.
plotHeatmap | A function to generate heatmap panels sorted by integrated cluster assignment.
plotHMBayes | A function to generate heatmap panels sorted by integrated cluster assignment.
plotiCluster | A function to generate cluster separability matrix plot.
plotRI | A function to generate reproducibility index plot.
tune.iCluster2 | Integrative clustering of multiple genomic data types
tune.iCluster2b | Integrative clustering of multi-omics data
tune.iClusterBayes | Integrative clustering of multiple genomic data
tune.iClusterPlus | Integrative clustering of multiple genomic data
UM | Uveal Melanoma data
variation.hg18.v10.nov.2010 | Human genome variants of the NCBI 36 (hg18) assembly