Package: immApex
Title: Tools for Adaptive Immune Receptor Sequence-Based Machine and
        Deep Learning
Version: 1.6.0
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre", "cph"), email = "ncborch@gmail.com"),
	person(given = "Qile", family = "Yang", role = "ctb", email = "qile.yang@berkeley.edu", comment = c(ORCID = "0009-0005-0148-2499")))
Description: A set of tools to for machine and deep learning in R from
        amino acid and nucleotide sequences focusing on adaptive immune
        receptors. The package includes pre-processing of sequences,
        unifying gene nomenclature usage, encoding sequences, and
        combining models. This package will serve as the basis of
        future immune receptor sequence functions/packages/models
        compatible with the scRepertoire ecosystem.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
biocViews: Software, ImmunoOncology, SingleCell, Classification,
        Annotation, Sequencing, MotifAnnotation
Depends: R (>= 4.3.0)
Imports: immReferent, Matrix, matrixStats, methods, Rcpp,
        SingleCellExperiment, stats, stringr, utils
Suggests: BiocStyle, dplyr, ggraph, ggplot2, igraph, knitr, markdown,
        Peptides, randomForest, rmarkdown, scRepertoire, spelling,
        testthat, tidygraph, viridis
LinkingTo: Rcpp
VignetteBuilder: knitr
Language: en-US
URL: https://github.com/BorchLab/immApex/
BugReports: https://github.com/BorchLab/immApex/issues
Config/pak/sysreqs: libicu-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:03:57 UTC
RemoteUrl: https://github.com/bioc/immApex
RemoteRef: RELEASE_3_23
RemoteSha: 880d138be06e2df199e17da7dd6c39596a0b1dff
NeedsCompilation: yes
Packaged: 2026-04-30 09:46:36 UTC; root
Author: Nick Borcherding [aut, cre, cph],
  Qile Yang [ctb] (ORCID: <https://orcid.org/0009-0005-0148-2499>)
Maintainer: Nick Borcherding <ncborch@gmail.com>
Built: R 4.6.0; x86_64-w64-mingw32; 2026-04-30 09:48:41 UTC; windows
Archs: x64
