Package: mCSEA
Type: Package
Title: Methylated CpGs Set Enrichment Analysis
Version: 1.31.3
Author: Jordi Martorell-Marugán and Pedro Carmona-Sáez
Maintainer: Jordi Martorell-Marugán <jmartorellm@gmail.com>
Description: Identification of diferentially methylated regions (DMRs)
        in predefined regions (promoters, CpG islands...) from the
        human genome using Illumina's 450K or EPIC microarray data.
        Provides methods to rank CpG probes based on linear models and
        includes plotting functions.
Depends: R (>= 3.5), mCSEAdata, Homo.sapiens
Suggests: Biobase, BiocGenerics, BiocStyle, FlowSorted.Blood.450k,
        knitr, leukemiasEset, minfi, minfiData, rmarkdown, RUnit
Imports: biomaRt, fgsea, GenomicFeatures, GenomicRanges, ggplot2,
        graphics, grDevices, Gviz, IRanges, limma, methods, parallel,
        S4Vectors, stats, SummarizedExperiment, utils
VignetteBuilder: knitr
biocViews: ImmunoOncology, DifferentialMethylation, DNAMethylation,
        Epigenetics, Genetics, GenomeAnnotation, MethylationArray,
        Microarray, MultipleComparison, TwoChannel
License: GPL-2
Encoding: UTF-8
LazyData: true
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-11-24 09:57:43 UTC
RemoteUrl: https://github.com/bioc/mCSEA
RemoteRef: HEAD
RemoteSha: 3a08149e5e7ef27c6c47b6233b43ed8707a1f308
NeedsCompilation: no
Packaged: 2026-03-11 08:50:50 UTC; root
Built: R 4.6.0; ; 2026-03-11 08:56:56 UTC; windows
