Package: primirTSS
Title: Prediction of pri-miRNA Transcription Start Site
Version: 1.30.0
Author: Pumin Li [aut, cre], Qi Xu [aut], Jie Li [aut], Jin Wang [aut]
Maintainer: Pumin Li <ipumin@163.com>
Description: A fast, convenient tool to identify the TSSs of miRNAs by
        integrating the data of H3K4me3 and Pol II as well as combining
        the conservation level and sequence feature, provided within
        both command-line and graphical interfaces, which achieves a
        better performance than the previous non-cell-specific methods
        on miRNA TSSs.
License: GPL-2
Encoding: UTF-8
RoxygenNote: 7.1.0
Depends: R (>= 3.5.0)
Imports: GenomicRanges (>= 1.32.2), S4Vectors (>= 0.18.2), rtracklayer
        (>= 1.40.3), dplyr (>= 0.7.6), stringr (>= 1.3.1), tidyr (>=
        0.8.1), Biostrings (>= 2.48.0), purrr (>= 0.2.5),
        BSgenome.Hsapiens.UCSC.hg38 (>= 1.4.1),
        phastCons100way.UCSC.hg38 (>= 3.7.1), GenomicScores (>= 1.4.1),
        shiny (>= 1.0.5), Gviz (>= 1.24.0), BiocGenerics (>= 0.26.0),
        IRanges (>= 2.14.10), TFBSTools (>= 1.18.0), JASPAR2018 (>=
        1.1.1), tibble (>= 1.4.2), R.utils (>= 2.6.0), stats, utils
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: ImmunoOncology, Sequencing, RNASeq, Genetics, Preprocessing,
        Transcription, GeneRegulation
URL: https://github.com/ipumin/primirTSS
BugReports: http://github.com/ipumin/primirTSS/issues
Config/pak/sysreqs: cmake make libgsl0-dev libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libpng-dev libuv1-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:48:38 UTC
RemoteUrl: https://github.com/bioc/primirTSS
RemoteRef: RELEASE_3_23
RemoteSha: 6bd6ca09d2e8ffbe8868a40b2634c4d37de0d416
NeedsCompilation: no
Packaged: 2026-04-30 00:00:26 UTC; root
Built: R 4.6.0; ; 2026-04-30 00:05:01 UTC; windows
