MsStash
This is the development version of MsStash; to use it, please install the devel version of Bioconductor.
Infrastructure to serialize and restore mass spectrometry data objects
Bioconductor version: Development (3.24)
The serialization mechanism of R allows to save and load R data objects in a binary format, that can however not be read by other programming languages or software. The MsStash package defines classes and method to enable serializing and restoring, or importing, mass spectrometry data objects to and from language agnostic file formats. A variety of different file types, including HDF5 and JSON-based formats defined by the Bioconductor *alabaster* package are supported. The file type can be defined and configured through a second argument `param` of the save/read methods. Additional packages extending MsStash provide the implementations to serialize/restore MS data objects.
Author: Johannes Rainer [aut, cre]
, Philippine Louail [aut]
, Laurent Gatto [ctb]
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
citation("MsStash")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MsStash")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsStash")| Storage Modes of MS Data Objects | HTML | R Script |
| Reference Manual |
Details
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
| Version | 0.99.0 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | GPL-3 |
| Depends | R (>= 4.6.0) |
| Imports | methods, ProtGenerics |
| System Requirements | |
| URL | https://github.com/RforMassSpectrometry/MsStash |
| Bug Reports | https://github.com/RforMassSpectrometry/MsStash/issues |
See More
| Suggests | BiocStyle, rmarkdown, knitr, alabaster.base, fs, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MsStash_0.99.0.tar.gz |
| Windows Binary (x86_64) | MsStash_0.99.0.zip |
| macOS Binary (big-sur-x86_64) | MsStash_0.99.0.tgz |
| macOS Binary (sonoma-arm64) | MsStash_0.99.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MsStash |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsStash |
| Bioc Package Browser | https://code.bioconductor.org/browse/MsStash/ |
| Package Short Url | https://bioconductor.org/packages/MsStash/ |
| Package Downloads Report | Download Stats |